Variant report

Variant	rs1117520
Chromosome Location	chr4:103311561-103311562
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10008684	0.81[EUR][1000 genomes]
rs10019247	0.86[EUR][1000 genomes]
rs10461136	0.90[EUR][1000 genomes]
rs10516492	0.85[ASN][1000 genomes]
rs10516493	0.85[ASN][1000 genomes]
rs11097775	0.89[ASN][1000 genomes]
rs11097776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097777	0.86[ASN][1000 genomes]
rs11097779	0.87[ASN][1000 genomes]
rs11097780	0.88[EUR][1000 genomes]
rs1117522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1159788	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728286	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11730379	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11730944	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11730958	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11935847	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12499248	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12500141	0.87[EUR][1000 genomes]
rs12505568	0.86[EUR][1000 genomes]
rs12508086	0.86[ASN][1000 genomes]
rs12508121	0.86[ASN][1000 genomes]
rs12510124	0.90[CEU][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs13104988	0.86[EUR][1000 genomes]
rs13107285	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13112930	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13114804	0.88[EUR][1000 genomes]
rs13125848	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13147260	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1381893	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs1381894	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1381895	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1381897	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1381899	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462943	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs1462945	0.86[ASN][1000 genomes]
rs1462948	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462949	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462950	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462951	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462952	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1599684	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1599685	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1599686	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17032552	0.89[ASN][1000 genomes]
rs1870952	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054393	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs2086004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126625	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34197129	0.94[JPT][hapmap]
rs34835832	0.95[EUR][1000 genomes]
rs34927061	0.85[ASN][1000 genomes]
rs35651507	0.85[ASN][1000 genomes]
rs4146611	0.89[ASN][1000 genomes]
rs4356914	0.89[ASN][1000 genomes]
rs4594728	0.89[ASN][1000 genomes]
rs4699012	0.81[CEU][hapmap]
rs4699019	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699020	0.89[ASN][1000 genomes]
rs4699021	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699024	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4699026	0.90[CEU][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs55801262	0.88[ASN][1000 genomes]
rs56202913	0.85[ASN][1000 genomes]
rs56344531	0.88[ASN][1000 genomes]
rs62328212	0.89[ASN][1000 genomes]
rs6810692	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6814302	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6835467	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6843751	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844796	0.90[EUR][1000 genomes]
rs6856314	0.90[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7436937	0.90[CEU][hapmap]
rs7657947	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7661593	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7683109	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7695249	0.89[ASN][1000 genomes]
rs962399	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs984055	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9996947	0.94[JPT][hapmap]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103308000-103312800	Weak transcription	Placenta	Placenta
2	chr4:103308800-103312400	Enhancers	HMEC	breast
3	chr4:103309000-103312200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:103309000-103312400	Enhancers	NHEK	skin
5	chr4:103309200-103311800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:103309400-103317000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:103310200-103312000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:103310200-103313200	Weak transcription	Hela-S3	cervix
9	chr4:103311000-103311600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr4:103311000-103311800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:103311000-103313000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr4:103311000-103315600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr4:103311200-103311600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:103311200-103311600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr4:103311200-103312000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr4:103311200-103312400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:103311200-103313000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr4:103311200-103314000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:103311200-103314000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr4:103311400-103311600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr4:103311400-103311600	Enhancers	Primary B cells from cord blood	blood
22	chr4:103311400-103311800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:103311400-103312000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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