Variant report

Variant	rs13112930
Chromosome Location	chr4:103317618-103317619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103265824..103267642-chr4:103314988..103317969,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138821	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10008684	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10019247	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10461136	0.85[EUR][1000 genomes]
rs11097775	0.80[ASN][1000 genomes]
rs11097776	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11097779	0.80[ASN][1000 genomes]
rs11097780	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1117522	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1159788	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11728286	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11730379	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11730944	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11730958	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11935847	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12499248	0.88[EUR][1000 genomes]
rs12500141	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12505568	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12510124	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13104988	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13107285	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13114804	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13125848	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13147260	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1381893	0.86[EUR][1000 genomes]
rs1381894	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1381895	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1381897	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1381899	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1462943	0.86[EUR][1000 genomes]
rs1462948	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1462949	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1462950	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1462951	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1462952	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1599684	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1599685	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1599686	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17032552	0.80[ASN][1000 genomes]
rs1870952	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2054393	0.87[EUR][1000 genomes]
rs2086004	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2126625	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34835832	0.90[EUR][1000 genomes]
rs4146611	0.80[ASN][1000 genomes]
rs4356914	0.80[ASN][1000 genomes]
rs4594728	0.80[ASN][1000 genomes]
rs4699019	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4699020	0.80[ASN][1000 genomes]
rs4699021	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4699024	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4699026	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55801262	0.81[ASN][1000 genomes]
rs56344531	0.81[ASN][1000 genomes]
rs62328212	0.80[ASN][1000 genomes]
rs6810692	0.82[EUR][1000 genomes]
rs6814302	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6835467	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6843751	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6844796	0.85[EUR][1000 genomes]
rs7657947	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7661593	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7683109	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7695249	0.80[ASN][1000 genomes]
rs962399	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs984055	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103312800-103320400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr4:103313400-103318000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr4:103314600-103317800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:103315600-103319800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr4:103317200-103327400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:103317400-103321000	Enhancers	Primary monocytes fromperipheralblood	blood

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