Variant report

Variant	rs1870952
Chromosome Location	chr4:103315072-103315073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103313463..103315405-chr4:103321372..103323443,2	K562	blood:
2	chr4:103265824..103267642-chr4:103314988..103317969,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138821	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10008684	0.81[EUR][1000 genomes]
rs10019247	0.86[EUR][1000 genomes]
rs10461136	0.90[EUR][1000 genomes]
rs10516492	0.85[ASN][1000 genomes]
rs10516493	0.85[ASN][1000 genomes]
rs11097775	0.89[ASN][1000 genomes]
rs11097776	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097777	0.86[ASN][1000 genomes]
rs11097779	0.87[ASN][1000 genomes]
rs11097780	0.88[EUR][1000 genomes]
rs1117520	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1117522	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1159788	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728286	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11730379	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11730944	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11730958	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11935847	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12499248	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs12500141	0.87[EUR][1000 genomes]
rs12505568	0.86[EUR][1000 genomes]
rs12508086	0.86[ASN][1000 genomes]
rs12508121	0.86[ASN][1000 genomes]
rs12510124	0.87[CEU][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs13104988	0.86[EUR][1000 genomes]
rs13107285	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13112930	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13114804	0.88[EUR][1000 genomes]
rs13125848	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13147260	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1381893	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs1381894	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1381895	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1381897	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1381899	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462943	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs1462945	0.86[ASN][1000 genomes]
rs1462948	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462949	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462950	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462951	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462952	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1599684	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1599685	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1599686	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17032552	0.89[ASN][1000 genomes]
rs2054393	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs2086004	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126625	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34197129	0.94[JPT][hapmap]
rs34835832	0.95[EUR][1000 genomes]
rs34927061	0.85[ASN][1000 genomes]
rs35651507	0.85[ASN][1000 genomes]
rs4146611	0.89[ASN][1000 genomes]
rs4356914	0.89[ASN][1000 genomes]
rs4594728	0.89[ASN][1000 genomes]
rs4699019	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699020	0.89[ASN][1000 genomes]
rs4699021	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699024	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4699026	0.82[CEU][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs55801262	0.88[ASN][1000 genomes]
rs56202913	0.85[ASN][1000 genomes]
rs56344531	0.88[ASN][1000 genomes]
rs62328212	0.89[ASN][1000 genomes]
rs6810692	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6814302	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6835467	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6843751	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844796	0.90[EUR][1000 genomes]
rs6856314	0.90[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7436937	0.87[CEU][hapmap]
rs7657947	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7661593	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7683109	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7695249	0.89[ASN][1000 genomes]
rs962399	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs984055	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9996947	0.94[JPT][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103309400-103317000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:103311000-103315600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr4:103312800-103320400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:103313000-103317400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:103313400-103318000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr4:103314600-103317800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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