Variant report

Variant	rs1599686
Chromosome Location	chr4:103310927-103310928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103308466..103311400-chr4:103313181..103314983,2	MCF-7	breast:
2	chr4:103265258..103268006-chr4:103309617..103312569,2	K562	blood:

Variant related genes	Relation type
ENSG00000138821	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10019247	0.87[AMR][1000 genomes]
rs10461136	0.82[EUR][1000 genomes]
rs10516492	0.85[ASN][1000 genomes]
rs10516493	0.85[ASN][1000 genomes]
rs11097775	0.89[ASN][1000 genomes]
rs11097776	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097777	0.86[ASN][1000 genomes]
rs11097779	0.87[ASN][1000 genomes]
rs11097780	0.85[AMR][1000 genomes]
rs1117522	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1159788	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728286	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11730379	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11730944	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11730958	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11935847	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12499248	0.84[EUR][1000 genomes]
rs12500141	0.85[AMR][1000 genomes]
rs12505568	0.87[AMR][1000 genomes]
rs12508086	0.86[ASN][1000 genomes]
rs12508121	0.86[ASN][1000 genomes]
rs12510124	0.87[AMR][1000 genomes]
rs13104988	0.87[AMR][1000 genomes]
rs13107285	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13112930	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13114804	0.85[AMR][1000 genomes]
rs13125848	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13147260	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1381893	0.84[EUR][1000 genomes]
rs1381894	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1381895	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1381897	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1381899	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462943	0.84[EUR][1000 genomes]
rs1462945	0.86[ASN][1000 genomes]
rs1462948	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462949	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462950	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462951	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462952	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1599684	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1599685	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17032552	0.89[ASN][1000 genomes]
rs1870952	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054393	0.84[EUR][1000 genomes]
rs2086004	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126625	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34835832	0.87[EUR][1000 genomes]
rs34927061	0.85[ASN][1000 genomes]
rs35651507	0.85[ASN][1000 genomes]
rs4146611	0.89[ASN][1000 genomes]
rs4356914	0.89[ASN][1000 genomes]
rs4594728	0.89[ASN][1000 genomes]
rs4699019	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699020	0.89[ASN][1000 genomes]
rs4699021	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699024	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4699026	0.87[AMR][1000 genomes]
rs55801262	0.88[ASN][1000 genomes]
rs56202913	0.85[ASN][1000 genomes]
rs56344531	0.88[ASN][1000 genomes]
rs62328212	0.89[ASN][1000 genomes]
rs6810692	0.81[ASN][1000 genomes]
rs6814302	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6835467	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6843751	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844796	0.82[EUR][1000 genomes]
rs6856314	0.85[ASN][1000 genomes]
rs7657947	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7661593	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7683109	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7695249	0.89[ASN][1000 genomes]
rs962399	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs984055	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103308000-103312800	Weak transcription	Placenta	Placenta
2	chr4:103308800-103312400	Enhancers	HMEC	breast
3	chr4:103309000-103312200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:103309000-103312400	Enhancers	NHEK	skin
5	chr4:103309200-103311800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:103309400-103317000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:103310200-103311200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:103310200-103311200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:103310200-103311200	Weak transcription	NH-A	brain
10	chr4:103310200-103311400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:103310200-103312000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:103310200-103313200	Weak transcription	Hela-S3	cervix
13	chr4:103310800-103311000	Enhancers	Monocytes-CD14+_RO01746	blood

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