Variant report

Variant	rs9652107
Chromosome Location	chr13:96190232-96190233
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96190182..96191726-chr13:96328534..96331216,2	K562	blood:

Variant related genes	Relation type
ENSG00000102580	Chromatin interaction
ENSG00000247400	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4506761	0.81[CEU][hapmap]
rs4771918	0.85[CEU][hapmap]
rs7981330	0.85[CEU][hapmap]
rs9516597	0.85[CEU][hapmap]
rs9524996	0.84[CEU][hapmap]
rs9525014	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs971303	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9652107	UGGT2	cis	parietal	SCAN
rs9652107	CCNB2	trans	parietal	SCAN
rs9652107	CLDN10	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96183000-96192800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr13:96186400-96193000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:96188000-96193200	Weak transcription	Esophagus	oesophagus
4	chr13:96188000-96193200	Weak transcription	Psoas Muscle	Psoas
5	chr13:96188000-96199600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:96188200-96190600	Weak transcription	Pancreas	Pancrea
7	chr13:96188200-96193000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:96188200-96193000	Weak transcription	HSMM	muscle
9	chr13:96188200-96193200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr13:96188200-96193200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:96188400-96198800	Weak transcription	Hela-S3	cervix
12	chr13:96189000-96192800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:96189000-96192800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr13:96189000-96193200	Weak transcription	HUVEC	blood vessel
15	chr13:96189200-96190400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr13:96189400-96192800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr13:96189400-96192800	Weak transcription	HSMMtube	muscle
18	chr13:96189400-96193200	Weak transcription	Fetal Lung	lung
19	chr13:96189600-96192600	Weak transcription	Fetal Muscle Leg	muscle
20	chr13:96189600-96198800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr13:96189800-96193000	Weak transcription	Fetal Kidney	kidney
22	chr13:96189800-96193000	Weak transcription	A549	lung
23	chr13:96189800-96193200	Weak transcription	Brain Anterior Caudate	brain
24	chr13:96189800-96199000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr13:96190200-96192400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr13:96190200-96192600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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