Variant report

Variant	rs7981330
Chromosome Location	chr13:96181077-96181078
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11619109	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209534	0.90[ASN][1000 genomes]
rs4506761	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4540944	0.85[CHB][hapmap];0.83[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4771918	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.96[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7982853	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9302078	0.85[CHB][hapmap];0.88[ASN][1000 genomes]
rs9302079	0.85[CHB][hapmap];0.88[ASN][1000 genomes]
rs9516597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9524996	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556484	0.86[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs9556485	0.86[CHB][hapmap];0.88[ASN][1000 genomes]
rs9556486	0.85[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs9561893	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs9561895	0.89[ASN][1000 genomes]
rs9590296	0.90[ASN][1000 genomes]
rs9590297	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9590298	0.89[ASN][1000 genomes]
rs9652107	0.85[CEU][hapmap]
rs971303	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752652	chr13:96059024-96181597	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv525760	chr13:96176034-96186575	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96176200-96182400	Weak transcription	Pancreas	Pancrea
2	chr13:96176600-96181800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:96177000-96182200	Weak transcription	Hela-S3	cervix
4	chr13:96177000-96182200	Weak transcription	HMEC	breast
5	chr13:96177000-96182400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr13:96181000-96181200	Enhancers	Cortex derived primary cultured neurospheres	brain

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