Variant report

Variant	rs11619109
Chromosome Location	chr13:96182760-96182761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs2209534	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4506761	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4540944	0.90[ASN][1000 genomes]
rs4771918	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7981330	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982853	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9302078	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9302079	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9516597	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9524996	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556484	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9556485	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9556486	0.89[ASN][1000 genomes]
rs9561893	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9561895	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9590295	0.86[AFR][1000 genomes]
rs9590296	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9590297	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9590298	0.92[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs971303	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs980094	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv525760	chr13:96176034-96186575	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96181200-96185800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:96181600-96183000	Enhancers	Primary hematopoietic stem cells	blood
3	chr13:96181600-96183000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr13:96181800-96183000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:96181800-96183000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr13:96181800-96183000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:96181800-96183200	Enhancers	HUVEC	blood vessel
8	chr13:96182200-96183000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:96182200-96183000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr13:96182200-96183000	Enhancers	Hela-S3	cervix
11	chr13:96182200-96183000	Enhancers	HMEC	breast
12	chr13:96182400-96182800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr13:96182400-96182800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr13:96182400-96182800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr13:96182400-96182800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr13:96182400-96182800	Enhancers	Aorta	Aorta
17	chr13:96182400-96182800	Enhancers	Fetal Lung	lung
18	chr13:96182400-96182800	Enhancers	HepG2	liver
19	chr13:96182400-96182800	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr13:96182400-96183000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr13:96182400-96183000	Enhancers	Osteobl	bone
22	chr13:96182400-96183400	Enhancers	Pancreas	Pancrea
23	chr13:96182400-96185200	Enhancers	A549	lung
24	chr13:96182600-96182800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr13:96182600-96182800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr13:96182600-96182800	Enhancers	NHDF-Ad	bronchial
27	chr13:96182600-96186400	Weak transcription	NH-A	brain
28	chr13:96182600-96187600	Weak transcription	HSMMtube	muscle

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