Variant report

Variant	rs7982853
Chromosome Location	chr13:96184137-96184138
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11619109	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2209534	0.89[ASN][1000 genomes]
rs4506761	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4540944	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4771918	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7981330	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9302078	0.87[ASN][1000 genomes]
rs9302079	0.87[ASN][1000 genomes]
rs9516597	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9524996	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9556484	0.88[ASN][1000 genomes]
rs9556485	0.87[ASN][1000 genomes]
rs9556486	0.88[ASN][1000 genomes]
rs9561893	0.84[ASN][1000 genomes]
rs9561895	0.88[ASN][1000 genomes]
rs9590296	0.89[ASN][1000 genomes]
rs9590297	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9590298	0.87[ASN][1000 genomes]
rs971303	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv525760	chr13:96176034-96186575	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96181200-96185800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:96182400-96185200	Enhancers	A549	lung
3	chr13:96182600-96186400	Weak transcription	NH-A	brain
4	chr13:96182600-96187600	Weak transcription	HSMMtube	muscle
5	chr13:96182800-96184600	Weak transcription	Fetal Lung	lung
6	chr13:96182800-96185800	Weak transcription	HepG2	liver
7	chr13:96182800-96186000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr13:96183000-96184200	Weak transcription	Osteobl	bone
9	chr13:96183000-96185800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:96183000-96186000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:96183000-96186200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr13:96183000-96187000	Weak transcription	HMEC	breast
13	chr13:96183000-96187200	Weak transcription	Hela-S3	cervix
14	chr13:96183000-96187400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr13:96183000-96188800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr13:96183000-96192800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr13:96183200-96185800	Weak transcription	HUVEC	blood vessel
18	chr13:96183400-96185800	Weak transcription	Pancreas	Pancrea
19	chr13:96183600-96187200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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