Variant report

Variant	rs9590297
Chromosome Location	chr13:96181661-96181662
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11619109	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209534	0.90[ASN][1000 genomes]
rs4506761	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4540944	0.90[ASN][1000 genomes]
rs4771918	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7981330	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982853	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9302078	0.88[ASN][1000 genomes]
rs9302079	0.88[ASN][1000 genomes]
rs9516597	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9524996	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9556484	0.89[ASN][1000 genomes]
rs9556485	0.88[ASN][1000 genomes]
rs9556486	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9561893	0.85[ASN][1000 genomes]
rs9561895	0.89[ASN][1000 genomes]
rs9590296	0.90[ASN][1000 genomes]
rs9590298	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs971303	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv525760	chr13:96176034-96186575	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96176200-96182400	Weak transcription	Pancreas	Pancrea
2	chr13:96176600-96181800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:96177000-96182200	Weak transcription	Hela-S3	cervix
4	chr13:96177000-96182200	Weak transcription	HMEC	breast
5	chr13:96177000-96182400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr13:96181200-96185800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr13:96181600-96183000	Enhancers	Primary hematopoietic stem cells	blood
8	chr13:96181600-96183000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links