Variant report
Variant | rs9653522 |
---|---|
Chromosome Location | chr2:48493872-48493873 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:48492137..48494411-chr2:48542775..48545328,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10164456 | 1.00[AMR][1000 genomes] |
rs10165262 | 1.00[AMR][1000 genomes] |
rs10167097 | 1.00[AMR][1000 genomes] |
rs10168301 | 1.00[AMR][1000 genomes] |
rs10169977 | 1.00[AMR][1000 genomes] |
rs10170181 | 1.00[AMR][1000 genomes] |
rs10171243 | 1.00[AMR][1000 genomes] |
rs10177012 | 1.00[AMR][1000 genomes] |
rs10178938 | 1.00[AMR][1000 genomes] |
rs10180159 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10180254 | 1.00[AMR][1000 genomes] |
rs10184942 | 1.00[AMR][1000 genomes] |
rs10186155 | 1.00[AMR][1000 genomes] |
rs10187019 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10187502 | 1.00[AMR][1000 genomes] |
rs10192404 | 1.00[AMR][1000 genomes] |
rs10197056 | 1.00[AMR][1000 genomes] |
rs10198245 | 1.00[AMR][1000 genomes] |
rs10199098 | 1.00[AMR][1000 genomes] |
rs10199615 | 1.00[AMR][1000 genomes] |
rs10200180 | 1.00[AMR][1000 genomes] |
rs10204343 | 1.00[AMR][1000 genomes] |
rs10206551 | 1.00[AMR][1000 genomes] |
rs10208042 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10209432 | 1.00[AMR][1000 genomes] |
rs12328834 | 1.00[AMR][1000 genomes] |
rs12329068 | 1.00[AMR][1000 genomes] |
rs13387285 | 1.00[AMR][1000 genomes] |
rs13387357 | 1.00[AMR][1000 genomes] |
rs13390201 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs13391880 | 1.00[AMR][1000 genomes] |
rs13396735 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs13397110 | 1.00[AMR][1000 genomes] |
rs13397541 | 1.00[AMR][1000 genomes] |
rs13399261 | 1.00[AMR][1000 genomes] |
rs13402261 | 1.00[AMR][1000 genomes] |
rs13408747 | 1.00[AMR][1000 genomes] |
rs13410143 | 1.00[AMR][1000 genomes] |
rs13418349 | 1.00[AMR][1000 genomes] |
rs13419687 | 1.00[AMR][1000 genomes] |
rs13422341 | 1.00[AMR][1000 genomes] |
rs13424478 | 1.00[AMR][1000 genomes] |
rs13424841 | 1.00[AMR][1000 genomes] |
rs13430424 | 1.00[AMR][1000 genomes] |
rs13432235 | 1.00[AMR][1000 genomes] |
rs28623311 | 1.00[AMR][1000 genomes] |
rs28775335 | 1.00[AMR][1000 genomes] |
rs28784960 | 1.00[AMR][1000 genomes] |
rs28893847 | 1.00[AMR][1000 genomes] |
rs7340280 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7355330 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7355518 | 1.00[AMR][1000 genomes] |
rs9653523 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs9653524 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1009769 | chr2:47972642-48509765 | Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
2 | nsv535680 | chr2:47972642-48509765 | Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
3 | nsv530831 | chr2:48059709-48632317 | Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
4 | nsv519831 | chr2:48072855-48566031 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
5 | nsv1003766 | chr2:48102244-48559654 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:48491200-48494000 | Enhancers | Primary hematopoietic stem cells | blood |
2 | chr2:48493000-48496600 | Enhancers | Primary neutrophils fromperipheralblood | blood |
3 | chr2:48493000-48496600 | Enhancers | K562 | blood |
4 | chr2:48493200-48495800 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
5 | chr2:48493600-48494400 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
6 | chr2:48493600-48495600 | Weak transcription | Primary monocytes fromperipheralblood | blood |
7 | chr2:48493800-48494400 | Enhancers | H1 Cell Line | embryonic stem cell |