Variant report

Variant	rs9656980
Chromosome Location	chr8:130810411-130810412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10094445	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10096604	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10097810	0.85[ASN][1000 genomes]
rs10098559	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10956495	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1600931	0.82[ASN][1000 genomes]
rs1905168	0.82[ASN][1000 genomes]
rs1967018	0.83[ASN][1000 genomes]
rs1979475	0.85[ASN][1000 genomes]
rs1979476	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1988911	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2128386	0.83[ASN][1000 genomes]
rs2894495	0.85[ASN][1000 genomes]
rs3912318	0.85[ASN][1000 genomes]
rs3957254	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4103049	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4260864	0.85[ASN][1000 genomes]
rs4412339	0.87[ASN][1000 genomes]
rs4500051	0.85[ASN][1000 genomes]
rs4733741	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470781	0.86[ASN][1000 genomes]
rs6470782	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470783	0.87[ASN][1000 genomes]
rs6983184	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73406845	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7821985	0.82[ASN][1000 genomes]
rs7823788	0.87[ASN][1000 genomes]
rs7834217	0.85[ASN][1000 genomes]
rs7834660	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428524	chr8:130731660-130894467	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv522535	chr8:130804293-130844400	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv526686	chr8:130808973-130839132	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130808400-130811200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:130810000-130811200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:130810200-130811400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:130810400-130811200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin

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