Variant report

Variant	rs9657645
Chromosome Location	chr9:108269311-108269312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10991682	0.97[AFR][1000 genomes]
rs11999966	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12002748	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12004019	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12004886	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12342071	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13362922	0.84[AFR][1000 genomes]
rs1808155	0.96[AFR][1000 genomes]
rs1854124	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2149592	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2149593	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2417627	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41277781	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66820447	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7033452	0.98[AFR][1000 genomes]
rs7034699	0.98[AFR][1000 genomes]
rs7034702	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7042000	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7858616	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7867012	0.99[AFR][1000 genomes]
rs7870485	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053973	chr9:108199177-108300186	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv615115	chr9:108205262-108298183	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893692	chr9:108218852-108320988	ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
4	nsv1050141	chr9:108219667-108317424	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108214600-108309800	Weak transcription	HUVEC	blood vessel
2	chr9:108221000-108277200	Weak transcription	Left Ventricle	heart
3	chr9:108222200-108277000	Weak transcription	Ovary	ovary
4	chr9:108222600-108311400	Weak transcription	Fetal Heart	heart
5	chr9:108227400-108271600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:108227600-108278400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr9:108231800-108296800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:108233600-108272000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:108233600-108272400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:108233600-108277000	Weak transcription	Adipose Nuclei	Adipose
11	chr9:108242600-108300000	Weak transcription	Brain Anterior Caudate	brain
12	chr9:108247800-108271600	Weak transcription	NH-A	brain
13	chr9:108248000-108276000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:108251600-108272000	Weak transcription	HMEC	breast
15	chr9:108258200-108277200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:108258200-108282000	Weak transcription	Psoas Muscle	Psoas
17	chr9:108258400-108276800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:108258400-108276800	Weak transcription	Brain Germinal Matrix	brain
19	chr9:108259000-108277000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr9:108259600-108272200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:108259600-108282000	Weak transcription	HSMMtube	muscle
22	chr9:108262800-108277000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:108262800-108277600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr9:108263000-108277400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr9:108263800-108269400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr9:108264000-108275000	Weak transcription	Primary B cells from cord blood	blood
27	chr9:108264800-108277000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr9:108265200-108270800	Weak transcription	Small Intestine	intestine
29	chr9:108265400-108277000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr9:108265600-108276800	Weak transcription	Dnd41	blood
31	chr9:108266200-108277400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr9:108266400-108271600	Weak transcription	NHLF	lung
33	chr9:108266400-108275600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr9:108266400-108277800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr9:108266600-108271600	Weak transcription	NHDF-Ad	bronchial
36	chr9:108266600-108272000	Weak transcription	NHEK	skin
37	chr9:108266600-108275400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr9:108266600-108278000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr9:108266600-108278000	Weak transcription	K562	blood
40	chr9:108266600-108282000	Weak transcription	Hela-S3	cervix
41	chr9:108266800-108270200	Weak transcription	Fetal Stomach	stomach
42	chr9:108266800-108277000	Weak transcription	Fetal Muscle Leg	muscle
43	chr9:108266800-108277800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr9:108267000-108269600	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr9:108267800-108271200	ZNF genes & repeats	GM12878-XiMat	blood
46	chr9:108268000-108272800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr9:108268000-108277200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr9:108268000-108277200	Weak transcription	Right Ventricle	heart
49	chr9:108268200-108277200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr9:108268200-108277400	Weak transcription	Fetal Brain Male	brain

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