Variant report

Variant	rs7042000
Chromosome Location	chr9:108407034-108407035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108400818..108403460-chr9:108405807..108408679,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10991660	0.81[CEU][hapmap]
rs10991682	0.82[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11999966	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12002748	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12004019	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12004886	1.00[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12342071	1.00[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1808155	0.89[AFR][1000 genomes]
rs1854124	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2149592	1.00[CEU][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs2149593	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2417627	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs41277781	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66820447	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7033452	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7034699	0.91[AFR][1000 genomes]
rs7034702	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7858616	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7867012	0.81[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs7872832	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs9657645	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519023	chr9:108371549-108454745	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108354400-108412400	Weak transcription	Right Ventricle	heart
2	chr9:108354600-108412200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:108355200-108409200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:108366800-108418200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:108366800-108418200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:108367400-108407800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:108396200-108409200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:108397600-108409200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:108397600-108411800	Weak transcription	Lung	lung
10	chr9:108398400-108408800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:108400200-108409000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:108401600-108407400	Weak transcription	Primary T cells from cord blood	blood
13	chr9:108401600-108418000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr9:108402400-108407200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr9:108402800-108409600	Weak transcription	Ovary	ovary
16	chr9:108403800-108410200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:108407000-108407200	Enhancers	Brain Cingulate Gyrus	brain
18	chr9:108407000-108409000	Enhancers	K562	blood

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