Variant report

Variant	rs9660386
Chromosome Location	chr1:85240754-85240755
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85238570..85240771-chr1:85245143..85248001,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs74096144	0.86[ASN][1000 genomes]
rs9729380	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516470	chr1:85239564-85241298	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85238000-85240800	Enhancers	Fetal Brain Female	brain
2	chr1:85238000-85241200	Enhancers	HMEC	breast
3	chr1:85238200-85241000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:85238600-85242000	Weak transcription	Osteobl	bone
5	chr1:85239000-85241400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:85239200-85244800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:85239400-85240800	Weak transcription	Brain Germinal Matrix	brain
8	chr1:85239600-85241200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:85239600-85241200	Enhancers	Brain Anterior Caudate	brain
10	chr1:85239600-85241200	Enhancers	Pancreas	Pancrea
11	chr1:85239800-85240800	Enhancers	Fetal Brain Male	brain
12	chr1:85239800-85241200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr1:85240000-85241200	Weak transcription	NHEK	skin
14	chr1:85240000-85241600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr1:85240200-85240800	Enhancers	Brain Hippocampus Middle	brain
16	chr1:85240200-85241000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr1:85240200-85245200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr1:85240400-85241000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:85240400-85241000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr1:85240400-85244800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr1:85240600-85240800	Enhancers	Esophagus	oesophagus
22	chr1:85240600-85241000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
23	chr1:85240600-85241200	Enhancers	H1 Cell Line	embryonic stem cell
24	chr1:85240600-85243200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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