Variant report

Variant	rs9662213
Chromosome Location	chr1:173747252-173747253
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173746411..173749360-chr1:173790884..173793219,2	K562	blood:

Variant related genes	Relation type
ENSG00000120334	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11808435	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2092926	0.84[EUR][1000 genomes]
rs4628558	1.00[AFR][1000 genomes]
rs6672741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72709377	1.00[AFR][1000 genomes]
rs72709378	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72709383	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72709388	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72711436	1.00[AFR][1000 genomes]
rs7367559	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases
2	nsv831926	chr1:173702403-173894667	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	291 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173726200-173760600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:173726600-173749000	Weak transcription	Fetal Heart	heart
3	chr1:173727600-173750600	Weak transcription	HUVEC	blood vessel
4	chr1:173727600-173751400	Weak transcription	NHDF-Ad	bronchial
5	chr1:173728800-173748600	Weak transcription	Hela-S3	cervix
6	chr1:173728800-173749000	Weak transcription	Colonic Mucosa	Colon
7	chr1:173728800-173750000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:173728800-173764800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr1:173729000-173749000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:173729000-173752400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr1:173729000-173752600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:173729000-173752600	Weak transcription	Right Ventricle	heart
13	chr1:173729600-173752200	Weak transcription	A549	lung
14	chr1:173729800-173781800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:173731000-173749000	Weak transcription	GM12878-XiMat	blood
16	chr1:173735800-173781000	Weak transcription	Small Intestine	intestine
17	chr1:173736000-173751200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr1:173736600-173751200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr1:173736600-173792400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr1:173736800-173760600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:173737200-173750400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr1:173739400-173751400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr1:173741400-173757400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr1:173741800-173759600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:173741800-173762400	Weak transcription	Stomach Mucosa	stomach
26	chr1:173742800-173754400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:173742800-173759800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr1:173743000-173747800	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr1:173743000-173749800	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr1:173743200-173755400	Strong transcription	Primary B cells from peripheral blood	blood
31	chr1:173743200-173757200	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr1:173743200-173758800	Strong transcription	Primary T cells from cord blood	blood
33	chr1:173743400-173747400	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr1:173743400-173748200	Strong transcription	Fetal Lung	lung
35	chr1:173743400-173749400	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr1:173743400-173749600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr1:173743400-173752200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr1:173743400-173753800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr1:173743400-173755600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr1:173743400-173757200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:173743400-173757200	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr1:173743400-173757400	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr1:173743400-173757800	Strong transcription	Dnd41	blood
44	chr1:173743400-173758000	Strong transcription	Fetal Thymus	thymus
45	chr1:173743600-173747800	Strong transcription	Placenta	Placenta
46	chr1:173743600-173755400	Strong transcription	Adipose Nuclei	Adipose
47	chr1:173744000-173751400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr1:173744400-173752400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr1:173744600-173750800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr1:173744800-173752200	Weak transcription	HMEC	breast

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