Variant report

Variant	rs72709383
Chromosome Location	chr1:173652434-173652435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11808435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11809166	1.00[AFR][1000 genomes]
rs34591026	1.00[AFR][1000 genomes]
rs4628558	1.00[AFR][1000 genomes]
rs55816799	1.00[AFR][1000 genomes]
rs59834293	1.00[AFR][1000 genomes]
rs60969203	1.00[AFR][1000 genomes]
rs6672741	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72709309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72709377	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72709378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72709388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72726936	1.00[AFR][1000 genomes]
rs72726946	1.00[AFR][1000 genomes]
rs72726949	1.00[AFR][1000 genomes]
rs72726950	1.00[AFR][1000 genomes]
rs7367559	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7534736	1.00[AFR][1000 genomes]
rs9662213	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173639000-173657200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:173645800-173654600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr1:173650000-173654600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:173650600-173652800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:173651400-173652600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:173651400-173652600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr1:173651600-173652800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:173651800-173653400	Enhancers	K562	blood
9	chr1:173651800-173657400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:173652400-173652600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr1:173652400-173652800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr1:173652400-173654800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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