The 2.0 version of rSNPBase

Variant report

Variant rs59834293
Chromosome Location chr1:173429497-173429498
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173416400-173430000 Weak transcription Fetal Lung lung
2 chr1:173416800-173430000 Weak transcription Primary hematopoietic stem cells blood
3 chr1:173416800-173430200 Weak transcription GM12878-XiMat blood
4 chr1:173419000-173432000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr1:173419000-173439000 Weak transcription iPS-18 Cell Line embryonic stem cell
6 chr1:173421000-173432200 Weak transcription Fetal Brain Male brain
7 chr1:173421400-173430000 Weak transcription Skeletal Muscle Female skeletal muscle
8 chr1:173421400-173434000 Weak transcription Psoas Muscle Psoas
9 chr1:173421600-173429600 Weak transcription Pancreatic Islets Pancreatic Islet
10 chr1:173423200-173432000 Weak transcription A549 lung
11 chr1:173423400-173432600 Weak transcription HUES64 Cell Line embryonic stem cell
12 chr1:173423600-173430200 Weak transcription iPS-20b Cell Line embryonic stem cell
13 chr1:173423600-173432600 Weak transcription Placenta Amnion Placenta Amnion
14 chr1:173423800-173430200 Weak transcription K562 blood
15 chr1:173423800-173433400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr1:173423800-173436600 Weak transcription NHDF-Ad bronchial
17 chr1:173423800-173442400 Weak transcription NH-A brain
18 chr1:173424000-173429600 Weak transcription NHLF lung
19 chr1:173424000-173429800 Weak transcription Hela-S3 cervix
20 chr1:173424400-173430600 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr1:173424800-173430000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
22 chr1:173425000-173430200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
23 chr1:173425200-173442400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
24 chr1:173425400-173432200 Weak transcription Primary T helper naive cells from peripheral blood blood
25 chr1:173425800-173429600 Weak transcription Colonic Mucosa Colon
26 chr1:173426000-173431400 Weak transcription Fetal Kidney kidney
27 chr1:173427600-173429800 Weak transcription Fetal Intestine Large intestine
28 chr1:173427600-173431200 Strong transcription Primary B cells from peripheral blood blood
29 chr1:173427800-173430200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr1:173428600-173431000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr1:173428600-173431600 Strong transcription Liver Liver
32 chr1:173428800-173429800 Genic enhancers Primary T cells fromperipheralblood blood
33 chr1:173428800-173430000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr1:173428800-173430800 Strong transcription Fetal Brain Female brain
35 chr1:173428800-173430800 Strong transcription Fetal Stomach stomach
36 chr1:173428800-173431000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr1:173428800-173431000 Strong transcription Primary T regulatory cells fromperipheralblood blood
38 chr1:173428800-173431000 Strong transcription Brain Hippocampus Middle brain
39 chr1:173428800-173431000 Strong transcription Rectal Mucosa Donor 29 rectum
40 chr1:173428800-173431200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr1:173428800-173431200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
42 chr1:173428800-173431400 Strong transcription Primary monocytes fromperipheralblood blood
43 chr1:173428800-173431400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr1:173428800-173431400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
45 chr1:173428800-173431400 Strong transcription Brain Anterior Caudate brain
46 chr1:173428800-173432000 Strong transcription Primary T cells from cord blood blood
47 chr1:173429000-173429600 Genic enhancers HUES6 Cell Line embryonic stem cell
48 chr1:173429000-173429600 Genic enhancers Primary T helper naive cells fromperipheralblood blood
49 chr1:173429000-173429600 Genic enhancers Primary mononuclear cells fromperipheralblood Blood
50 chr1:173429000-173429600 Genic enhancers Fetal Muscle Leg muscle

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Last update: Aug 31, 2015