Variant report

Variant	rs72726950
Chromosome Location	chr1:173440464-173440465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11808435	1.00[AFR][1000 genomes]
rs11809166	1.00[AFR][1000 genomes]
rs34591026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55816799	1.00[AFR][1000 genomes]
rs57231379	1.00[AFR][1000 genomes]
rs57262055	1.00[AFR][1000 genomes]
rs59834293	1.00[AFR][1000 genomes]
rs60302114	1.00[AFR][1000 genomes]
rs60969203	1.00[AFR][1000 genomes]
rs72709309	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72709377	1.00[AFR][1000 genomes]
rs72709378	1.00[AFR][1000 genomes]
rs72709383	1.00[AFR][1000 genomes]
rs72709388	1.00[AFR][1000 genomes]
rs72726936	1.00[AFR][1000 genomes]
rs72726946	1.00[AFR][1000 genomes]
rs72726949	1.00[AFR][1000 genomes]
rs7534736	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173423800-173442400	Weak transcription	NH-A	brain
2	chr1:173425200-173442400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr1:173430400-173442400	Weak transcription	Gastric	stomach
4	chr1:173430400-173442800	Weak transcription	Pancreas	Pancrea
5	chr1:173430400-173444400	Weak transcription	Right Ventricle	heart
6	chr1:173430600-173442600	Weak transcription	Aorta	Aorta
7	chr1:173430600-173443200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:173430600-173444400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr1:173430800-173445000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr1:173431000-173442400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:173431000-173442400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:173431000-173442400	Weak transcription	Hela-S3	cervix
13	chr1:173431000-173442600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr1:173431000-173442600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr1:173431000-173444400	Weak transcription	Left Ventricle	heart
16	chr1:173431200-173442400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr1:173431200-173442800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr1:173431400-173441200	Weak transcription	HSMM	muscle
19	chr1:173431600-173442400	Weak transcription	Liver	Liver
20	chr1:173432800-173442600	Weak transcription	Fetal Heart	heart
21	chr1:173433000-173442400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:173433200-173444200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr1:173433400-173442800	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr1:173435600-173442800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr1:173435800-173442000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:173436400-173442800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr1:173437000-173442400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:173437200-173442200	Weak transcription	Osteobl	bone
29	chr1:173438000-173442600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
30	chr1:173438200-173445000	Weak transcription	Primary B cells from cord blood	blood
31	chr1:173438600-173441600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
32	chr1:173438800-173441200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr1:173438800-173442400	Weak transcription	HSMMtube	muscle
34	chr1:173439000-173440600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr1:173439000-173442800	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr1:173439200-173440600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr1:173439200-173442800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
38	chr1:173439400-173441800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
39	chr1:173439600-173442400	Weak transcription	NHDF-Ad	bronchial
40	chr1:173439800-173441000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
41	chr1:173439800-173441000	ZNF genes & repeats	Fetal Intestine Small	intestine
42	chr1:173439800-173441800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr1:173440000-173441200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
44	chr1:173440000-173442400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr1:173440000-173443200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr1:173440000-173444400	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr1:173440200-173441800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
48	chr1:173440200-173442200	Weak transcription	NHLF	lung
49	chr1:173440200-173442400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr1:173440200-173442400	Weak transcription	Brain Angular Gyrus	brain

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