Variant report

Variant	rs966226
Chromosome Location	chr3:146465376-146465377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1606174	0.82[EUR][1000 genomes]
rs1606176	0.82[EUR][1000 genomes]
rs1849162	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28630725	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6802568	0.82[EUR][1000 genomes]
rs9818011	0.83[EUR][1000 genomes]
rs9846527	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9856645	0.82[EUR][1000 genomes]
rs9870986	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9872768	0.82[EUR][1000 genomes]
rs994051	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516386	chr3:146366513-146758405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591961	chr3:146394094-146725217	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1007875	chr3:146401461-146776618	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877624	chr3:146414837-146536741	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv998040	chr3:146416916-146729962	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv536760	chr3:146416916-146729962	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1001931	chr3:146419061-146745361	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv877625	chr3:146461435-146521978	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146463400-146466000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:146463400-146466200	Enhancers	HUVEC	blood vessel
3	chr3:146463400-146467200	Enhancers	HSMM	muscle
4	chr3:146463400-146467200	Enhancers	Osteobl	bone
5	chr3:146463600-146467200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:146463800-146467600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:146464000-146467200	Enhancers	Dnd41	blood
8	chr3:146464000-146468800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:146464200-146465400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:146464400-146465400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:146464400-146465400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:146464600-146465600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:146464600-146465600	Weak transcription	NHEK	skin
14	chr3:146464600-146467000	Enhancers	HSMMtube	muscle
15	chr3:146464800-146468200	Weak transcription	HMEC	breast
16	chr3:146465000-146465400	Weak transcription	NH-A	brain
17	chr3:146465000-146475600	Weak transcription	NHDF-Ad	bronchial
18	chr3:146465200-146466400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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