Variant report
| Variant | rs9856645 |
|---|---|
| Chromosome Location | chr3:146410919-146410920 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1606174 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1606176 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1849162 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1877259 | 0.97[EUR][1000 genomes] |
| rs28630725 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6440448 | 0.86[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6440449 | 0.86[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6802568 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6810372 | 0.83[EUR][1000 genomes] |
| rs7629838 | 0.81[AFR][1000 genomes] |
| rs7629881 | 0.83[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7650609 | 0.83[EUR][1000 genomes] |
| rs7651782 | 0.83[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7651979 | 0.83[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs966226 | 0.82[EUR][1000 genomes] |
| rs9818011 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9831186 | 0.95[EUR][1000 genomes] |
| rs9835908 | 0.85[EUR][1000 genomes] |
| rs9836760 | 0.84[EUR][1000 genomes] |
| rs9846527 | 0.87[EUR][1000 genomes] |
| rs9870986 | 0.81[EUR][1000 genomes] |
| rs9871947 | 0.86[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9872768 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs994051 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs994052 | 0.84[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs994053 | 0.86[AFR][1000 genomes];0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv516386 | chr3:146366513-146758405 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv591961 | chr3:146394094-146725217 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1007875 | chr3:146401461-146776618 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:146409600-146422000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr3:146410200-146413200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
