Variant report
| Variant | rs9831186 |
|---|---|
| Chromosome Location | chr3:146403408-146403409 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1119889 | 0.97[ASN][1000 genomes] |
| rs1119890 | 0.97[ASN][1000 genomes] |
| rs1606174 | 0.95[EUR][1000 genomes] |
| rs1606176 | 0.95[EUR][1000 genomes] |
| rs1849162 | 0.93[EUR][1000 genomes] |
| rs1877259 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1912784 | 0.99[ASN][1000 genomes] |
| rs1912785 | 0.99[ASN][1000 genomes] |
| rs28630725 | 0.93[EUR][1000 genomes] |
| rs2868456 | 0.99[ASN][1000 genomes] |
| rs4681123 | 0.98[ASN][1000 genomes] |
| rs6440448 | 0.81[EUR][1000 genomes] |
| rs6440449 | 0.81[EUR][1000 genomes] |
| rs6802568 | 0.95[EUR][1000 genomes] |
| rs7629881 | 0.81[EUR][1000 genomes] |
| rs7651782 | 0.81[EUR][1000 genomes] |
| rs7651979 | 0.81[EUR][1000 genomes] |
| rs9818011 | 0.94[EUR][1000 genomes] |
| rs9819519 | 0.99[ASN][1000 genomes] |
| rs9835908 | 0.80[EUR][1000 genomes] |
| rs9846527 | 0.82[EUR][1000 genomes] |
| rs9856645 | 0.95[EUR][1000 genomes] |
| rs986171 | 0.99[ASN][1000 genomes] |
| rs986172 | 0.99[ASN][1000 genomes] |
| rs9871947 | 0.81[EUR][1000 genomes] |
| rs9872768 | 0.95[EUR][1000 genomes] |
| rs994051 | 0.95[EUR][1000 genomes] |
| rs994052 | 0.81[EUR][1000 genomes] |
| rs994053 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv516386 | chr3:146366513-146758405 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv591961 | chr3:146394094-146725217 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1007875 | chr3:146401461-146776618 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:146398400-146404200 | Enhancers | Dnd41 | blood |
