Variant report

Variant	rs9662949
Chromosome Location	chr1:179667650-179667651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10157829	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11581272	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12021675	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12035247	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12042409	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12045588	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4474210	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4520380	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4652442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58593782	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6425588	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6659507	0.97[ASN][1000 genomes]
rs6691856	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6692069	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6699527	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74132225	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7520355	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7540303	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7546418	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7547484	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7547988	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9661439	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9661468	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9662949	TDRD5	cis	Nerve Tibial	GTEx
rs9662949	TDRD5	cis	Adipose Subcutaneous	GTEx
rs9662949	TDRD5	cis	Thyroid	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179662600-179669600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links