Variant report

Variant	rs7540303
Chromosome Location	chr1:179629191-179629192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10157829	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10494522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10798709	0.89[CEU][hapmap]
rs10913846	0.82[CEU][hapmap]
rs10913863	0.89[CEU][hapmap]
rs11578278	0.81[CEU][hapmap]
rs11806102	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs12021675	0.89[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12035247	0.89[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12039153	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs12042409	0.89[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12045588	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12564117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4072098	0.89[CEU][hapmap]
rs4233182	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs4408116	0.89[CEU][hapmap]
rs4474210	0.88[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4483370	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4520380	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4651045	0.89[CEU][hapmap]
rs4652429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4652432	0.89[CEU][hapmap]
rs4652433	0.89[CEU][hapmap]
rs4652434	0.89[CEU][hapmap]
rs4652442	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58593782	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6425580	0.89[CEU][hapmap]
rs6425581	0.86[CEU][hapmap]
rs6425588	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6672701	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap]
rs6689426	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6691856	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6692069	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6699527	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74132225	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7513095	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7519436	0.89[CEU][hapmap]
rs7520355	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7547484	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7547988	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9661439	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9661468	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9662949	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7540303	TDRD5	cis	Esophagus Mucosa	GTEx
rs7540303	TDRD5	cis	Thyroid	GTEx
rs7540303	TDRD5	cis	Nerve Tibial	GTEx
rs7540303	TDRD5	cis	Adipose Subcutaneous	GTEx
rs7540303	TDRD5	cis	Artery Aorta	GTEx
rs7540303	AXDND1	cis	Thyroid	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179628000-179632200	Weak transcription	HUVEC	blood vessel

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