Variant report

Variant	rs4652429
Chromosome Location	chr1:179601911-179601912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179601826..179604447-chr1:179622966..179625873,2	MCF-7	breast:
2	chr1:179601476..179603491-chr1:179604853..179608456,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10157829	0.82[JPT][hapmap]
rs10494522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10798709	0.82[JPT][hapmap]
rs10913846	0.81[JPT][hapmap]
rs10913863	0.82[JPT][hapmap]
rs11578278	0.82[JPT][hapmap]
rs11806102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs12021675	0.82[JPT][hapmap]
rs12035247	0.82[JPT][hapmap]
rs12039153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs12042409	0.82[JPT][hapmap]
rs12045588	0.80[AMR][1000 genomes]
rs12564117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4072098	0.82[JPT][hapmap]
rs4233182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs4408116	0.82[JPT][hapmap]
rs4474210	0.82[JPT][hapmap]
rs4483370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4520380	0.80[AMR][1000 genomes]
rs4651045	0.82[JPT][hapmap]
rs4652432	0.82[JPT][hapmap]
rs4652433	0.82[JPT][hapmap]
rs4652434	0.82[JPT][hapmap]
rs4652438	0.89[CEU][hapmap];0.82[JPT][hapmap]
rs58593782	0.80[AMR][1000 genomes]
rs6425580	0.82[JPT][hapmap]
rs6425581	0.82[JPT][hapmap]
rs6425585	0.90[CEU][hapmap];0.82[JPT][hapmap]
rs6425588	0.83[JPT][hapmap];0.80[AMR][1000 genomes]
rs6659507	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6672701	0.87[CHB][hapmap];1.00[YRI][hapmap]
rs6691856	0.83[JPT][hapmap];0.80[AMR][1000 genomes]
rs6692069	0.82[JPT][hapmap];0.80[AMR][1000 genomes]
rs7513095	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7519436	0.82[JPT][hapmap]
rs7520355	0.80[AMR][1000 genomes]
rs7540303	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7547484	0.82[JPT][hapmap];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013000	chr1:179589193-179628536	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4652429	TDRD5	cis	Esophagus Mucosa	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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