Variant report

Variant	rs4652438
Chromosome Location	chr1:179652861-179652862
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10157829	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap];0.91[ASN][1000 genomes]
rs10494517	0.81[JPT][hapmap]
rs10494518	0.81[JPT][hapmap]
rs10494522	0.89[CEU][hapmap];0.85[GIH][hapmap];0.92[MEX][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10798709	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10913846	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs10913863	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap]
rs11578278	1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap]
rs11585517	0.81[JPT][hapmap]
rs11589161	0.95[JPT][hapmap]
rs11806102	0.89[CEU][hapmap];0.85[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap]
rs11808258	0.81[JPT][hapmap]
rs12021675	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12035247	0.87[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12039153	0.88[CEU][hapmap]
rs12042409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12045588	0.95[ASN][1000 genomes]
rs12564117	0.80[GIH][hapmap];0.88[MEX][hapmap]
rs1410593	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2209922	0.81[JPT][hapmap]
rs2274622	0.81[JPT][hapmap]
rs3765547	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4072098	0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs4233182	0.89[CEU][hapmap];0.85[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap]
rs4408116	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap]
rs4474210	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.94[ASN][1000 genomes]
rs4483370	0.89[CEU][hapmap];0.85[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4520380	0.96[ASN][1000 genomes]
rs4651045	1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap]
rs4652406	0.81[JPT][hapmap]
rs4652412	0.81[JPT][hapmap]
rs4652429	0.89[CEU][hapmap];0.82[JPT][hapmap]
rs4652432	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap]
rs4652433	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap]
rs4652434	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55635521	0.83[ASN][1000 genomes]
rs58593782	0.96[ASN][1000 genomes]
rs61310274	0.83[ASN][1000 genomes]
rs6425574	0.81[JPT][hapmap]
rs6425580	1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap]
rs6425581	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6425585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs6425588	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6659507	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6672701	0.82[GIH][hapmap];0.88[MEX][hapmap]
rs6689426	0.95[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs6691856	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[ASN][1000 genomes]
rs6692069	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.96[ASN][1000 genomes]
rs74132225	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7513095	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7519436	1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap]
rs7520355	0.96[ASN][1000 genomes]
rs7547484	1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.96[ASN][1000 genomes]
rs7547988	0.96[ASN][1000 genomes]
rs964983	0.81[JPT][hapmap]
rs964984	0.81[JPT][hapmap]
rs9661439	0.96[ASN][1000 genomes]
rs9661468	0.94[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4652438	TDRD5	cis	Esophagus Mucosa	GTEx
rs4652438	CACNA1E	cis	cerebellum	SCAN
rs4652438	TDRD5	cis	cerebellum	SCAN
rs4652438	TDRD5	cis	parietal	SCAN
rs4652438	FAM5B	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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