Variant report

Variant	rs9667193
Chromosome Location	chr11:71524861-71524862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:71524766-71525168	A549	lung:	n/a	chr11:71524959-71524975 chr11:71524973-71524994 chr11:71524958-71524976 chr11:71524971-71524989 chr11:71524953-71524974
2	HEY1	chr11:71524623-71525104	HepG2	liver:	n/a	n/a
3	CTCF	chr11:71524860-71525010	SK-N-SH_RA	brain:	n/a	chr11:71524959-71524975 chr11:71524973-71524994 chr11:71524958-71524976 chr11:71524971-71524989 chr11:71524953-71524974
4	MYC	chr11:71524843-71524936	MCF10A-Er-Src	breast:	n/a	n/a
5	RUNX3	chr11:71524762-71525132	GM12878	blood:	n/a	n/a
6	POLR2A	chr11:71524522-71525154	GM12891	blood:	n/a	n/a
7	CTCF	chr11:71524860-71525010	Caco-2	colon:	n/a	chr11:71524959-71524975 chr11:71524973-71524994 chr11:71524958-71524976 chr11:71524971-71524989 chr11:71524953-71524974
8	CTCF	chr11:71524766-71525060	H1-hESC	embryonic stem cell:	n/a	chr11:71524959-71524975 chr11:71524973-71524994 chr11:71524958-71524976 chr11:71524971-71524989 chr11:71524953-71524974
9	CTCF	chr11:71524860-71525010	HRE	kidney:	n/a	chr11:71524959-71524975 chr11:71524973-71524994 chr11:71524958-71524976 chr11:71524971-71524989 chr11:71524953-71524974
10	ZBTB7A	chr11:71524825-71524963	K562	blood:	n/a	n/a
11	CTCF	chr11:71524800-71524950	HAc	cerebellar:	n/a	n/a
12	POLR2A	chr11:71524667-71525046	MCF-7	breast:	n/a	n/a
13	POLR2A	chr11:71524667-71525031	HepG2	liver:	n/a	n/a
14	CTCF	chr11:71524780-71524930	HCM	heart:	n/a	n/a
15	POLR2A	chr11:71524585-71525011	U87	brain:	n/a	n/a
16	USF1	chr11:71524850-71525067	HepG2	liver:	n/a	n/a
17	CTCF	chr11:71524840-71524990	GM12870	blood:	n/a	chr11:71524959-71524975 chr11:71524958-71524976 chr11:71524971-71524989 chr11:71524953-71524974
18	RAD21	chr11:71524817-71525117	GM12878	blood:	n/a	chr11:71524956-71524975 chr11:71524972-71524991
19	PML	chr11:71524663-71525108	GM12878	blood:	n/a	n/a
20	FOXM1	chr11:71524657-71525111	GM12878	blood:	n/a	n/a
21	CTCF	chr11:71524840-71524990	BE2_C	brain:	n/a	chr11:71524959-71524975 chr11:71524958-71524976 chr11:71524971-71524989 chr11:71524953-71524974
22	CTCF	chr11:71524860-71525010	HMF	breast:	n/a	chr11:71524959-71524975 chr11:71524973-71524994 chr11:71524958-71524976 chr11:71524971-71524989 chr11:71524953-71524974
23	POLR2A	chr11:71524519-71524992	HUVEC	blood vessel:	n/a	n/a
24	POLR2A	chr11:71524727-71525046	HUVEC	blood vessel:	n/a	n/a
25	POLR2A	chr11:71524666-71525069	GM12892	blood:	n/a	n/a
26	POLR2A	chr11:71524597-71525074	SK-N-SH	brain:	n/a	n/a
27	CTCF	chr11:71524541-71525170	A549	lung:	n/a	chr11:71524959-71524975 chr11:71524973-71524994 chr11:71524958-71524976 chr11:71524971-71524989 chr11:71524953-71524974
28	MAZ	chr11:71524568-71525108	IMR90	lung:	n/a	n/a
29	CTCF	chr11:71524780-71524930	HMEC	breast:	n/a	n/a
30	CTCF	chr11:71524827-71525122	Lung_OC	lung:	n/a	chr11:71524959-71524975 chr11:71524973-71524994 chr11:71524958-71524976 chr11:71524971-71524989 chr11:71524953-71524974
31	CTCF	chr11:71524820-71524970	MCF-7	breast:	n/a	n/a
32	YY1	chr11:71524818-71525066	GM12878	blood:	n/a	n/a
33	POLR2A	chr11:71524684-71525051	MCF10A-Er-Src	breast:	n/a	n/a
34	SMC3	chr11:71524818-71525116	Hela-S3	cervix:	n/a	chr11:71524960-71524974
35	CTCF	chr11:71524800-71524950	AG04450	lung:	n/a	n/a
36	POLR2A	chr11:71524325-71525026	GM12878	blood:	n/a	n/a
37	CTCF	chr11:71524813-71525123	K562	blood:	n/a	chr11:71524959-71524975 chr11:71524973-71524994 chr11:71524958-71524976 chr11:71524971-71524989 chr11:71524953-71524974
38	POLR2A	chr11:71524528-71525155	HUVEC	blood vessel:	n/a	n/a
39	YY1	chr11:71524640-71524967	A549	lung:	n/a	n/a
40	IRF4	chr11:71524767-71525242	GM12878	blood:	n/a	n/a
41	EBF1	chr11:71524690-71525089	GM12878	blood:	n/a	chr11:71524887-71524898
42	POLR2A	chr11:71524587-71525063	GM18951	blood:	n/a	n/a
43	CHD1	chr11:71524751-71525147	IMR90	lung:	n/a	n/a
44	CTCF	chr11:71524800-71524950	GM12868	blood:	n/a	n/a
45	CTCF	chr11:71524780-71524930	GM12868	blood:	n/a	n/a
46	CTCF	chr11:71524780-71524930	A549	lung:	n/a	n/a
47	CTCF	chr11:71524824-71525112	LNCaP	prostate:	n/a	chr11:71524959-71524975 chr11:71524973-71524994 chr11:71524958-71524976 chr11:71524971-71524989 chr11:71524953-71524974
48	POLR2A	chr11:71524603-71525048	GM12891	blood:	n/a	n/a
49	NRF1	chr11:71524745-71525056	GM12878	blood:	n/a	n/a
50	CTCF	chr11:71524820-71524970	HFF	foreskin:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:71524852-71524902	SKMC	muscle:	n/a
2	chr11:71524852-71524902	ovcar-3	ovarian:	n/a
3	chr11:71524852-71524902	HCM	heart:	n/a
4	chr11:71524852-71524902	PANC-1	pancreas:	n/a
5	chr11:71524852-71524902	HUVEC	blood vessel:	n/a
6	chr11:71524852-71524902	AoSMC	blood vessel:	n/a
7	chr11:71524852-71524902	MCF-7	breast:	n/a
8	chr11:71524852-71524902	SAEC	small airway:	n/a
9	chr11:71524852-71524902	BE2_C	brain:	n/a
10	chr11:71524852-71524902	GM12878	blood:	n/a
11	chr11:71524852-71524902	SK-N-SH	brain:	n/a
12	chr11:71524852-71524902	T-47D	breast:	n/a
13	chr11:71524852-71524902	NHDF-neo	bronchial:	n/a
14	chr11:71524852-71524902	HCF	heart:	n/a
15	chr11:71524852-71524902	NHBE	bronchial:	n/a
16	chr11:71524852-71524902	CMK	blood:	n/a
17	chr11:71524852-71524902	GM12891	blood:	n/a
18	chr11:71524852-71524902	IMR90	lung:	fetal
19	chr11:71524852-71524902	AG09309	skin:	n/a
20	chr11:71524852-71524902	Caco-2	colon:	n/a
21	chr11:71524852-71524902	U87	brain:	n/a
22	chr11:71524852-71524902	HNPCEpiC	eye:	n/a
23	chr11:71524852-71524902	Hela-S3	cervix:	n/a
24	chr11:71524852-71524902	AG10803	skin:	n/a
25	chr11:71524852-71524902	RPTEC	kidney:	n/a
26	chr11:71524852-71524902	GM12892	blood:	n/a
27	chr11:71524852-71524902	BJ	skin:	n/a
28	chr11:71524852-71524902	A549	lung:	n/a
29	chr11:71524852-71524902	NT2-D1	testis:	n/a
30	chr11:71524852-71524902	HepG2	liver:	n/a
31	chr11:71524852-71524902	AG04449	skin:	fetal
32	chr11:71524852-71524902	HEEpiC	esophagus:	n/a
33	chr11:71524852-71524902	ECC-1	luminal epithelium:	n/a
34	chr11:71524852-71524902	GM19239	blood:	n/a
35	chr11:71524852-71524902	AG09319	gingival:	n/a
36	chr11:71524852-71524902	K562	blood:	n/a
37	chr11:71524852-71524902	HAEpiC	amniotic membrane:	n/a
38	chr11:71524852-71524902	HMEC	breast:	n/a
39	chr11:71524852-71524902	MCF10A-Er-Src	breast:	n/a
40	chr11:71524852-71524902	HCPEpiC	choroid plexus:	n/a
41	chr11:71524852-71524902	HRE	kidney:	n/a
42	chr11:71524852-71524902	LNCaP	prostate:	n/a
43	chr11:71524852-71524902	AG04450	lung:	fetal
44	chr11:71524852-71524902	NH-A	brain:	n/a
45	chr11:71524852-71524902	HPAEpiC	pulmonary alveolar:	n/a
46	chr11:71524852-71524902	GM06990	blood:	n/a
47	chr11:71524852-71524902	ProgFib	skin:	n/a
48	chr11:71524852-71524902	HCT-116	colon:	n/a
49	chr11:71524852-71524902	Jurkat	blood:	n/a
50	chr11:71524852-71524902	PrEC	prostate:	n/a

Variant related genes	Relation type
ENSG00000248671	TF binding region
ENSG00000248671	CpG island

Extended variants
information (count: 104 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10751157	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10751158	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10792914	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10792915	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10792941	0.81[AFR][1000 genomes]
rs10792951	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10792952	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10792964	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10792966	0.80[EUR][1000 genomes]
rs10898614	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10898618	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898623	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898688	0.82[AMR][1000 genomes]
rs10898689	0.81[AMR][1000 genomes]
rs11234998	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11235020	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11235021	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11235058	0.80[AFR][1000 genomes]
rs11235093	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11235192	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11606005	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11606044	0.82[EUR][1000 genomes]
rs12420318	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1806569	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1814920	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1945051	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1955061	0.80[EUR][1000 genomes]
rs2003240	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2005541	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35755503	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36088573	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3750915	0.86[AFR][1000 genomes]
rs3750916	0.80[AFR][1000 genomes]
rs3819237	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3862788	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3933398	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4021274	0.83[AMR][1000 genomes]
rs4122047	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4122048	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4245456	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4245457	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4245458	0.90[AFR][1000 genomes]
rs4316538	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4474464	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4944192	0.80[AFR][1000 genomes]
rs4945257	0.86[ASN][1000 genomes]
rs4945263	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4945295	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4945297	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4945299	0.86[ASN][1000 genomes]
rs61889010	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61889033	0.82[AFR][1000 genomes]
rs6592335	0.84[EUR][1000 genomes]
rs6592357	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592358	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592380	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7102608	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7104538	0.81[EUR][1000 genomes]
rs7104541	0.81[EUR][1000 genomes]
rs7107929	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7113289	0.80[AFR][1000 genomes]
rs7113408	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7113497	0.82[AFR][1000 genomes]
rs7120359	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7129249	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7129417	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7129769	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7927726	0.82[EUR][1000 genomes]
rs7944189	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7947421	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv1037088	chr11:71293875-71538991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv3527986	chr11:71298409-71620955	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	esv3527987	chr11:71298409-71620955	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1041027	chr11:71299175-71527896	Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv1051879	chr11:71299175-71536860	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv1044041	chr11:71299175-71538991	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	esv2761682	chr11:71299175-71619923	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
9	nsv897904	chr11:71316093-71615727	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
10	nsv972041	chr11:71330518-71615123	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
11	esv3369013	chr11:71338874-71612242	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
12	nsv1054575	chr11:71352127-71536860	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
13	nsv1047568	chr11:71352127-71538991	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
14	nsv427893	chr11:71363639-71529688	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
15	esv2758276	chr11:71363639-71657576	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
16	esv2759836	chr11:71363639-71657576	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
17	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
18	nsv1049480	chr11:71363999-71533919	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
19	nsv897905	chr11:71371354-71615727	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
20	esv1819073	chr11:71371742-71618164	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
21	nsv1044072	chr11:71379653-71527699	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
22	nsv1038551	chr11:71379653-71533919	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
23	nsv897906	chr11:71386905-71543708	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
24	nsv897907	chr11:71386905-71549174	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
25	nsv1045511	chr11:71395657-71527896	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
26	nsv1043197	chr11:71423465-71527699	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
27	nsv1037092	chr11:71443870-71527699	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
28	esv11723	chr11:71498860-71553549	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
29	esv1804003	chr11:71512115-71563035	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
30	esv2760190	chr11:71513455-71552665	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
31	esv11824	chr11:71515433-71603968	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
32	nsv8837	chr11:71517340-71559915	Active TSS Weak transcription Flanking Active TSS Enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
33	esv1794199	chr11:71517609-71550455	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
34	esv1803631	chr11:71521288-71560091	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs9667193	FAM86C1	cis	Skin Sun Exposed Lower leg	GTEx
rs9667193	FAM86C1	cis	Muscle Skeletal	GTEx
rs9667193	FAM86C1	cis	Artery Aorta	GTEx
rs9667193	FAM86C1	cis	Artery Tibial	GTEx

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71523600-71525000	Active TSS	Brain Hippocampus Middle	brain
2	chr11:71523600-71525000	Active TSS	Stomach Smooth Muscle	stomach
3	chr11:71524200-71525000	Active TSS	H1 Cell Line	embryonic stem cell
4	chr11:71524200-71525000	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr11:71524200-71525000	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr11:71524200-71525000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:71524200-71525000	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr11:71524200-71525000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:71524200-71525000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:71524200-71525200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:71524400-71525000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:71524400-71525000	Active TSS	H9 Cell Line	embryonic stem cell
13	chr11:71524400-71525000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:71524400-71525000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:71524400-71525000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:71524400-71525000	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr11:71524400-71525000	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr11:71524400-71525000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:71524400-71525000	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr11:71524400-71525000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:71524400-71525000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:71524400-71525000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:71524400-71525000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:71524400-71525000	Active TSS	Primary monocytes fromperipheralblood	blood
25	chr11:71524400-71525000	Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr11:71524400-71525000	Active TSS	Primary B cells from peripheral blood	blood
27	chr11:71524400-71525000	Active TSS	Primary hematopoietic stem cells	blood
28	chr11:71524400-71525000	Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr11:71524400-71525000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr11:71524400-71525000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
31	chr11:71524400-71525000	Active TSS	Primary T helper cells PMA-I stimulated	--
32	chr11:71524400-71525000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:71524400-71525000	Active TSS	Primary T helper cells fromperipheralblood	blood
34	chr11:71524400-71525000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr11:71524400-71525000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:71524400-71525000	Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr11:71524400-71525000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:71524400-71525000	Active TSS	Muscle Satellite Cultured Cells	--
39	chr11:71524400-71525000	Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr11:71524400-71525000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:71524400-71525000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:71524400-71525000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:71524400-71525000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:71524400-71525000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr11:71524400-71525000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:71524400-71525000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
47	chr11:71524400-71525000	Active TSS	Adipose Nuclei	Adipose
48	chr11:71524400-71525000	Active TSS	Brain Angular Gyrus	brain
49	chr11:71524400-71525000	Active TSS	Brain Germinal Matrix	brain
50	chr11:71524400-71525000	Active TSS	Brain Inferior Temporal Lobe	brain

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