Variant report

Variant	rs9672839
Chromosome Location	chr15:93568884-93568885
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93330075..93332715-chr15:93568236..93570299,2	K562	blood:
2	chr15:93566666..93569192-chr15:93570705..93573458,2	MCF-7	breast:
3	chr15:93568688..93569217-chr15:93578899..93579602,2	K562	blood:

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10852186	1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13759	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2033846	0.88[ASN][1000 genomes]
rs28558199	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7179432	1.00[ASW][hapmap];0.85[CEU][hapmap];0.82[LWK][hapmap];0.81[YRI][hapmap]
rs8039293	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
2	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
3	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
4	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv917347	chr15:93444094-93586814	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
6	nsv904500	chr15:93556442-93584615	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1041668	chr15:93558188-93611598	Bivalent Enhancer Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	esv1835897	chr15:93568884-93589740	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93493200-93571000	Strong transcription	Dnd41	blood
2	chr15:93493200-93571200	Strong transcription	Rectal Mucosa Donor 29	rectum
3	chr15:93493400-93569600	Strong transcription	Placenta	Placenta
4	chr15:93493400-93571000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:93493400-93571000	Strong transcription	Rectal Mucosa Donor 31	rectum
6	chr15:93493600-93571400	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr15:93493800-93571400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr15:93494000-93570400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:93494000-93570800	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:93494000-93571000	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:93494000-93571400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:93505000-93569800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:93506000-93569800	Strong transcription	HepG2	liver
14	chr15:93506400-93569600	Strong transcription	Fetal Muscle Trunk	muscle
15	chr15:93509600-93569600	Strong transcription	NHDF-Ad	bronchial
16	chr15:93509600-93571200	Strong transcription	Fetal Lung	lung
17	chr15:93509600-93571400	Strong transcription	Duodenum Mucosa	Duodenum
18	chr15:93509800-93572000	Strong transcription	Fetal Intestine Large	intestine
19	chr15:93514200-93570800	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr15:93521800-93569400	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:93523000-93570600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:93525600-93570600	Strong transcription	NH-A	brain
23	chr15:93526000-93570400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:93526200-93570000	Strong transcription	NHEK	skin
25	chr15:93526600-93569800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr15:93526800-93572400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:93528000-93570200	Strong transcription	HMEC	breast
28	chr15:93531600-93569600	Strong transcription	K562	blood
29	chr15:93532800-93570600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:93533200-93571800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr15:93533200-93571800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr15:93534000-93572800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:93534200-93572200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr15:93535200-93571000	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr15:93536400-93569400	Strong transcription	HSMM	muscle
36	chr15:93538800-93570800	Strong transcription	NHLF	lung
37	chr15:93539000-93569600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:93540400-93571600	Strong transcription	Thymus	Thymus
39	chr15:93542800-93571000	Strong transcription	Hela-S3	cervix
40	chr15:93547000-93569800	Strong transcription	Brain Germinal Matrix	brain
41	chr15:93547400-93569600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
42	chr15:93548800-93569800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:93549000-93570000	Strong transcription	Osteobl	bone
44	chr15:93549000-93570400	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr15:93549200-93570400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr15:93551000-93570200	Strong transcription	HSMMtube	muscle
47	chr15:93551000-93571400	Strong transcription	Fetal Stomach	stomach
48	chr15:93551400-93570600	Strong transcription	Fetal Brain Female	brain
49	chr15:93551400-93570800	Strong transcription	Placenta Amnion	Placenta Amnion
50	chr15:93551600-93569800	Strong transcription	Brain Inferior Temporal Lobe	brain

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