Variant report

Variant	rs9675795
Chromosome Location	chr18:29463055-29463056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29449762..29451943-chr18:29462101..29464168,2	K562	blood:

Variant related genes	Relation type
ENSG00000153339	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10153421	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12326219	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12326244	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12327141	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12709653	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12956638	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12957365	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12957830	0.87[EUR][1000 genomes]
rs12959996	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12963424	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12963629	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12965515	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12965893	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12967531	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12968487	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035418	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2291238	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28540496	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34011014	0.97[ASN][1000 genomes]
rs34846731	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36062390	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4581778	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7233820	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7244508	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73954904	0.97[ASN][1000 genomes]
rs73958215	0.97[ASN][1000 genomes]
rs8084584	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8086196	0.97[ASN][1000 genomes]
rs8087104	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9807439	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431975	chr18:29311034-29527902	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1057229	chr18:29335175-29514265	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29405600-29481800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:29406200-29518600	Weak transcription	Fetal Brain Male	brain
3	chr18:29408600-29471800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr18:29409800-29466600	Weak transcription	Gastric	stomach
5	chr18:29417600-29515600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr18:29418400-29470400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr18:29431800-29499000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr18:29431800-29512600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr18:29432400-29468200	Weak transcription	Small Intestine	intestine
10	chr18:29432400-29480000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr18:29432600-29481600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr18:29432600-29507600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr18:29432600-29521400	Weak transcription	Stomach Mucosa	stomach
14	chr18:29446000-29489000	Strong transcription	Fetal Thymus	thymus
15	chr18:29449200-29489000	Strong transcription	Adipose Nuclei	Adipose
16	chr18:29450000-29464800	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr18:29450200-29471800	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr18:29451800-29465400	Strong transcription	Dnd41	blood
19	chr18:29452000-29472000	Strong transcription	Primary B cells from peripheral blood	blood
20	chr18:29455800-29464200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr18:29455800-29465200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr18:29456000-29479200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr18:29456000-29480000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr18:29456200-29466600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr18:29457000-29465200	Weak transcription	HSMMtube	muscle
26	chr18:29457000-29480400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr18:29457000-29505800	Weak transcription	Brain Angular Gyrus	brain
28	chr18:29457200-29463200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr18:29457200-29463400	Weak transcription	NH-A	brain
30	chr18:29457200-29463800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr18:29457200-29465200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr18:29457200-29468600	Weak transcription	HMEC	breast
33	chr18:29457200-29479600	Weak transcription	Colonic Mucosa	Colon
34	chr18:29457200-29493200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr18:29457400-29479800	Weak transcription	Pancreas	Pancrea
36	chr18:29457400-29484800	Weak transcription	NHEK	skin
37	chr18:29457600-29464000	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr18:29457600-29466600	Weak transcription	Spleen	Spleen
39	chr18:29457600-29479800	Weak transcription	Right Ventricle	heart
40	chr18:29458200-29464000	Weak transcription	Fetal Stomach	stomach
41	chr18:29458200-29466600	Weak transcription	Thymus	Thymus
42	chr18:29458200-29479600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr18:29458200-29479600	Weak transcription	Aorta	Aorta
44	chr18:29458200-29479600	Weak transcription	Esophagus	oesophagus
45	chr18:29458200-29482600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr18:29458600-29466600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr18:29458600-29485200	Weak transcription	Brain Substantia Nigra	brain
48	chr18:29458800-29469000	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr18:29458800-29471400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr18:29459000-29481400	Weak transcription	NHLF	lung

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