Variant report

Variant	rs9688408
Chromosome Location	chr6:132763644-132763645
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10484484	1.00[YRI][hapmap]
rs11961961	1.00[AMR][1000 genomes]
rs73553831	1.00[AMR][1000 genomes]
rs9385600	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132736800-132764600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:132757800-132764600	Weak transcription	NHDF-Ad	bronchial
3	chr6:132760000-132767200	Weak transcription	Primary B cells from cord blood	blood
4	chr6:132761200-132763800	Weak transcription	Osteobl	bone
5	chr6:132761200-132764800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:132761200-132764800	Weak transcription	HSMM	muscle
7	chr6:132761400-132764800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:132761400-132766400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:132761600-132764800	Weak transcription	NHLF	lung
10	chr6:132762600-132778000	Weak transcription	Aorta	Aorta
11	chr6:132762600-132778000	Weak transcription	Gastric	stomach
12	chr6:132763000-132764000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:132763000-132764200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:132763600-132764600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links