Variant report

Variant	rs9689799
Chromosome Location	chr6:35473057-35473058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10498734	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs12526404	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12527303	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527329	1.00[AFR][1000 genomes]
rs12527893	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs12528458	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529688	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12665445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334894	1.00[AFR][1000 genomes]
rs16877540	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1883637	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1977655	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2103680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55791123	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55922240	1.00[AFR][1000 genomes]
rs56060039	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56062505	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs56313753	1.00[AFR][1000 genomes]
rs56318292	1.00[AFR][1000 genomes]
rs56353810	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6906096	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894778	1.00[ASN][1000 genomes]
rs72894781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899748	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72899772	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72899794	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72899796	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72911380	0.83[EUR][1000 genomes]
rs72911394	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72911397	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72913405	1.00[AFR][1000 genomes]
rs72913423	1.00[AFR][1000 genomes]
rs72913427	1.00[AFR][1000 genomes]
rs72921231	1.00[AFR][1000 genomes]
rs747411	1.00[AFR][1000 genomes]
rs7754668	1.00[AFR][1000 genomes]
rs7756437	1.00[AFR][1000 genomes]
rs7765792	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7768598	0.82[EUR][1000 genomes]
rs9688674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
2	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases
3	nsv462909	chr6:35457396-35502202	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
4	nsv602912	chr6:35457396-35502202	Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
5	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	esv2761067	chr6:35471246-35573245	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35466400-35476800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:35466400-35479200	Weak transcription	Right Ventricle	heart
3	chr6:35466800-35477000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:35466800-35479400	Weak transcription	Right Atrium	heart
5	chr6:35467000-35473400	Weak transcription	Esophagus	oesophagus
6	chr6:35467400-35478600	Weak transcription	Fetal Lung	lung
7	chr6:35469000-35473200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:35469000-35473600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:35469200-35473400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:35469200-35473600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:35469200-35473600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:35469200-35473600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:35469200-35473800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:35469200-35474200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:35469800-35473200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr6:35471800-35473200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:35472000-35473400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:35472200-35473400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:35473000-35473200	Bivalent Enhancer	Fetal Muscle Leg	muscle
20	chr6:35473000-35473400	Enhancers	Placenta Amnion	Placenta Amnion

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