Variant report

Variant	rs9690526
Chromosome Location	chr7:63358532-63358533
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10225191	0.84[AFR][1000 genomes]
rs10231140	0.83[AMR][1000 genomes]
rs10232230	0.83[AFR][1000 genomes]
rs10245959	0.88[YRI][hapmap]
rs10248795	0.83[AFR][1000 genomes]
rs10256598	0.83[AMR][1000 genomes]
rs10268120	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10272760	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs10275509	0.83[AFR][1000 genomes]
rs10276713	0.83[AMR][1000 genomes]
rs10278463	0.88[YRI][hapmap]
rs28450603	0.89[AFR][1000 genomes]
rs28687829	0.89[AFR][1000 genomes]
rs55694993	0.85[AFR][1000 genomes]
rs6962010	0.83[AFR][1000 genomes]
rs9690370	1.00[YRI][hapmap]
rs9691123	1.00[YRI][hapmap]
rs9691720	0.89[YRI][hapmap]
rs9918695	0.88[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888255	chr7:63175168-63990100	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv888257	chr7:63226279-63464342	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv888258	chr7:63294907-63537173	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv534361	chr7:63328472-63955286	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
5	nsv524380	chr7:63346886-63361078	Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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