Variant report

Variant	rs9705599
Chromosome Location	chr2:56548721-56548722
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 177 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:172)

rs_ID	r²[population]
rs11829122	0.80[AFR][1000 genomes]
rs11829680	0.80[AFR][1000 genomes]
rs11830228	0.80[AFR][1000 genomes]
rs11830290	0.80[AFR][1000 genomes]
rs11830441	0.80[AFR][1000 genomes]
rs11830677	0.80[AFR][1000 genomes]
rs11831245	0.80[AFR][1000 genomes]
rs11831251	0.80[AFR][1000 genomes]
rs11831293	0.80[AFR][1000 genomes]
rs11831349	0.80[AFR][1000 genomes]
rs11831993	0.80[AFR][1000 genomes]
rs11832032	0.80[AFR][1000 genomes]
rs11833361	0.80[AFR][1000 genomes]
rs11833447	0.83[AFR][1000 genomes]
rs11833485	0.80[AFR][1000 genomes]
rs11833642	0.80[AFR][1000 genomes]
rs11834567	0.80[AFR][1000 genomes]
rs11834927	0.80[AFR][1000 genomes]
rs11835144	0.80[AFR][1000 genomes]
rs11835169	0.80[AFR][1000 genomes]
rs11835519	0.83[AFR][1000 genomes]
rs11835895	0.80[AFR][1000 genomes]
rs11835906	0.80[AFR][1000 genomes]
rs11836005	0.80[AFR][1000 genomes]
rs11836137	0.80[AFR][1000 genomes]
rs11836718	0.80[AFR][1000 genomes]
rs11837063	0.80[AFR][1000 genomes]
rs11837134	0.80[AFR][1000 genomes]
rs11837278	0.80[AFR][1000 genomes]
rs11837438	0.80[AFR][1000 genomes]
rs11837446	0.80[AFR][1000 genomes]
rs11837623	0.80[AFR][1000 genomes]
rs11837884	0.80[AFR][1000 genomes]
rs11837915	0.80[AFR][1000 genomes]
rs11838172	0.80[AFR][1000 genomes]
rs12099627	0.80[AFR][1000 genomes]
rs12099659	0.80[AFR][1000 genomes]
rs12819568	0.80[AFR][1000 genomes]
rs55657497	0.80[AFR][1000 genomes]
rs55681645	0.80[AFR][1000 genomes]
rs55703132	0.80[AFR][1000 genomes]
rs55714406	0.80[AFR][1000 genomes]
rs55877562	0.80[AFR][1000 genomes]
rs55952122	0.80[AFR][1000 genomes]
rs55959478	0.80[AFR][1000 genomes]
rs55967587	0.80[AFR][1000 genomes]
rs56049789	0.80[AFR][1000 genomes]
rs56071884	0.80[AFR][1000 genomes]
rs56090635	0.80[AFR][1000 genomes]
rs56094917	0.80[AFR][1000 genomes]
rs56098132	0.80[AFR][1000 genomes]
rs56120992	0.80[AFR][1000 genomes]
rs56150499	0.80[AFR][1000 genomes]
rs56159241	0.80[AFR][1000 genomes]
rs56177546	0.80[AFR][1000 genomes]
rs56188823	0.80[AFR][1000 genomes]
rs56205928	0.80[AFR][1000 genomes]
rs56207554	0.80[AFR][1000 genomes]
rs56237318	0.80[AFR][1000 genomes]
rs56242467	0.80[AFR][1000 genomes]
rs56314587	0.80[AFR][1000 genomes]
rs56361480	0.80[AFR][1000 genomes]
rs56391397	0.80[AFR][1000 genomes]
rs56409370	0.80[AFR][1000 genomes]
rs56412601	0.80[AFR][1000 genomes]
rs56715199	0.80[AFR][1000 genomes]
rs56724983	0.80[AFR][1000 genomes]
rs56748402	0.80[AFR][1000 genomes]
rs56768224	0.80[AFR][1000 genomes]
rs56837577	0.80[AFR][1000 genomes]
rs56909132	0.80[AFR][1000 genomes]
rs56965441	0.80[AFR][1000 genomes]
rs57081134	0.80[AFR][1000 genomes]
rs57260754	0.80[AFR][1000 genomes]
rs57371390	0.80[AFR][1000 genomes]
rs57610337	0.80[AFR][1000 genomes]
rs57766387	0.80[AFR][1000 genomes]
rs57875495	0.80[AFR][1000 genomes]
rs58032451	0.80[AFR][1000 genomes]
rs58044216	0.80[AFR][1000 genomes]
rs58238273	0.80[AFR][1000 genomes]
rs58301692	0.80[AFR][1000 genomes]
rs58363858	0.80[AFR][1000 genomes]
rs58370767	0.80[AFR][1000 genomes]
rs58381871	0.80[AFR][1000 genomes]
rs58386990	0.80[AFR][1000 genomes]
rs58624224	0.80[AFR][1000 genomes]
rs58729422	0.80[AFR][1000 genomes]
rs58797991	0.80[AFR][1000 genomes]
rs58879230	0.80[AFR][1000 genomes]
rs58955776	0.80[AFR][1000 genomes]
rs59420328	0.80[AFR][1000 genomes]
rs59442403	0.80[AFR][1000 genomes]
rs59480955	0.80[AFR][1000 genomes]
rs59498608	0.80[AFR][1000 genomes]
rs59556442	0.80[AFR][1000 genomes]
rs59634197	0.80[AFR][1000 genomes]
rs59823325	0.80[AFR][1000 genomes]
rs59868168	0.80[AFR][1000 genomes]
rs60174931	0.80[AFR][1000 genomes]
rs60552369	0.80[AFR][1000 genomes]
rs60686453	0.80[AFR][1000 genomes]
rs60703540	0.80[AFR][1000 genomes]
rs61250726	0.80[AFR][1000 genomes]
rs61265571	0.80[AFR][1000 genomes]
rs61324351	0.80[AFR][1000 genomes]
rs61352041	0.80[AFR][1000 genomes]
rs61411066	0.80[AFR][1000 genomes]
rs61471632	0.80[AFR][1000 genomes]
rs61565811	0.80[AFR][1000 genomes]
rs61687260	0.80[AFR][1000 genomes]
rs74074113	0.80[AFR][1000 genomes]
rs74074118	0.80[AFR][1000 genomes]
rs74074130	0.80[AFR][1000 genomes]
rs74074132	0.80[AFR][1000 genomes]
rs74074136	0.80[AFR][1000 genomes]
rs74074142	0.80[AFR][1000 genomes]
rs74074143	0.80[AFR][1000 genomes]
rs74074145	0.80[AFR][1000 genomes]
rs74074160	0.80[AFR][1000 genomes]
rs74074164	0.80[AFR][1000 genomes]
rs74074165	0.80[AFR][1000 genomes]
rs74074173	0.80[AFR][1000 genomes]
rs74074174	0.80[AFR][1000 genomes]
rs74074178	0.80[AFR][1000 genomes]
rs74074194	0.80[AFR][1000 genomes]
rs74074199	0.80[AFR][1000 genomes]
rs74074200	0.80[AFR][1000 genomes]
rs74074212	0.80[AFR][1000 genomes]
rs74075903	0.80[AFR][1000 genomes]
rs74075911	0.80[AFR][1000 genomes]
rs74075914	0.80[AFR][1000 genomes]
rs74075919	0.80[AFR][1000 genomes]
rs74075924	0.80[AFR][1000 genomes]
rs74075926	0.80[AFR][1000 genomes]
rs74075929	0.80[AFR][1000 genomes]
rs74075977	0.80[AFR][1000 genomes]
rs74075981	0.80[AFR][1000 genomes]
rs74075988	0.80[AFR][1000 genomes]
rs74075989	0.80[AFR][1000 genomes]
rs74075992	0.80[AFR][1000 genomes]
rs74075994	0.80[AFR][1000 genomes]
rs74075995	0.80[AFR][1000 genomes]
rs74077249	0.80[AFR][1000 genomes]
rs74077256	0.80[AFR][1000 genomes]
rs74077323	0.83[AFR][1000 genomes]
rs74077325	0.83[AFR][1000 genomes]
rs74077334	0.83[AFR][1000 genomes]
rs74077337	0.80[AFR][1000 genomes]
rs74077343	0.83[AFR][1000 genomes]
rs74077351	0.80[AFR][1000 genomes]
rs74077358	0.80[AFR][1000 genomes]
rs74077359	0.80[AFR][1000 genomes]
rs74077360	0.80[AFR][1000 genomes]
rs74077603	0.80[AFR][1000 genomes]
rs74077604	0.80[AFR][1000 genomes]
rs74077606	0.80[AFR][1000 genomes]
rs74077607	0.80[AFR][1000 genomes]
rs74077617	0.80[AFR][1000 genomes]
rs74077621	0.80[AFR][1000 genomes]
rs74077622	0.80[AFR][1000 genomes]
rs74077625	0.80[AFR][1000 genomes]
rs74077628	0.80[AFR][1000 genomes]
rs74077630	0.80[AFR][1000 genomes]
rs9705699	0.80[AFR][1000 genomes]
rs9705808	0.80[AFR][1000 genomes]
rs9705830	0.80[AFR][1000 genomes]
rs9705863	0.80[AFR][1000 genomes]
rs9706028	0.80[AFR][1000 genomes]
rs9706487	1.00[AFR][1000 genomes]
rs9706488	1.00[AFR][1000 genomes]
rs9706494	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56527600-56561000	Weak transcription	HSMM	muscle
2	chr2:56546200-56552800	Weak transcription	Left Ventricle	heart

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