Variant report

Variant	rs9717629
Chromosome Location	chr6:149983900-149983901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149976600..149978666-chr6:149982921..149985539,2	K562	blood:
2	chr6:149971279..149975034-chr6:149981677..149984189,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11753017	1.00[MEX][hapmap]
rs2343263	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149970000-149989600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:149970200-149985800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:149970200-149988200	Weak transcription	Aorta	Aorta
4	chr6:149970200-149989600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:149970200-149989600	Weak transcription	Small Intestine	intestine
6	chr6:149970200-149989800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:149970400-149985600	Weak transcription	Colonic Mucosa	Colon
8	chr6:149970400-149986600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:149970400-149986600	Weak transcription	Hela-S3	cervix
10	chr6:149970400-149987600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:149970400-149989600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:149970400-149989600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:149970400-149992800	Weak transcription	Fetal Heart	heart
14	chr6:149970400-149996400	Weak transcription	Fetal Brain Male	brain
15	chr6:149970600-149984200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:149970600-149986000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:149970600-149986000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:149970600-149986200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:149970600-149989600	Weak transcription	Esophagus	oesophagus
20	chr6:149970600-149989600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr6:149970800-149992400	Weak transcription	Right Ventricle	heart
22	chr6:149972200-149986000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:149977200-150022600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:149977400-150001600	Strong transcription	Placenta	Placenta
25	chr6:149977800-150001800	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:149977800-150005800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:149977800-150020600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:149978000-150029200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:149978600-149989400	Weak transcription	Colon Smooth Muscle	Colon
30	chr6:149978800-149989000	Weak transcription	HSMMtube	muscle
31	chr6:149978800-149989200	Weak transcription	Brain Substantia Nigra	brain
32	chr6:149979000-149985600	Weak transcription	Thymus	Thymus
33	chr6:149979400-149995800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr6:149980000-149984800	Strong transcription	Fetal Brain Female	brain
35	chr6:149980000-149987000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:149980000-150003400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:149980000-150008000	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr6:149980200-149987000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr6:149980200-149987600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:149980200-149998600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:149980400-149986800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:149980400-149987200	Strong transcription	Liver	Liver
43	chr6:149980400-149995800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr6:149980400-149997200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr6:149980400-149998600	Strong transcription	Duodenum Mucosa	Duodenum
46	chr6:149980400-150001600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:149980600-149987000	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr6:149980600-150024800	Strong transcription	Fetal Thymus	thymus
49	chr6:149980800-149986800	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:149980800-149987000	Strong transcription	Primary hematopoietic stem cells	blood

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