Variant report

Variant	rs9725247
Chromosome Location	chr1:85305485-85305486
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11161464	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1325272	0.92[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1409215	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9726895	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9727725	0.82[EUR][1000 genomes]
rs9729018	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830448	chr1:85294094-85491110	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85289400-85330800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:85296600-85312800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:85301200-85305600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:85301200-85306200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:85301400-85306200	Weak transcription	Fetal Heart	heart
6	chr1:85301400-85308600	Weak transcription	Stomach Mucosa	stomach
7	chr1:85301600-85306000	Weak transcription	HMEC	breast
8	chr1:85301600-85306600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:85301600-85307400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:85301600-85307400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:85302000-85306400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:85302400-85306600	Weak transcription	NHEK	skin
13	chr1:85304000-85313200	Weak transcription	Gastric	stomach
14	chr1:85304600-85306000	Enhancers	Liver	Liver
15	chr1:85305200-85305800	Enhancers	Left Ventricle	heart
16	chr1:85305200-85305800	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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