Variant report

Variant	rs9727725
Chromosome Location	chr1:85286679-85286680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11161454	0.84[ASW][hapmap]
rs11161462	0.81[GIH][hapmap];0.90[MKK][hapmap]
rs11161464	1.00[ASW][hapmap];0.87[CEU][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];0.95[LWK][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1325272	0.93[CHB][hapmap];0.89[CHD][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1409215	0.80[CEU][hapmap];0.85[YRI][hapmap];0.80[EUR][1000 genomes]
rs2389786	0.86[CHB][hapmap];0.93[CHD][hapmap];0.81[ASN][1000 genomes]
rs9662096	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9725247	0.82[EUR][1000 genomes]
rs9729018	0.84[ASW][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.95[LWK][hapmap];0.98[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85264000-85295600	Weak transcription	NHEK	skin
2	chr1:85266400-85287200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:85278200-85287200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:85281200-85289200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:85282400-85295800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:85284800-85287800	Enhancers	Fetal Heart	heart
7	chr1:85286000-85287000	Enhancers	GM12878-XiMat	blood
8	chr1:85286000-85287200	Weak transcription	Right Atrium	heart
9	chr1:85286200-85287000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:85286200-85287400	Weak transcription	Left Ventricle	heart
11	chr1:85286400-85287200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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