Variant report
| Variant | rs9739561 |
|---|---|
| Chromosome Location | chr12:62444921-62444922 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs17125680 | 1.00[YRI][hapmap] |
| rs17125685 | 1.00[YRI][hapmap] |
| rs17125794 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs17125807 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs17125839 | 1.00[YRI][hapmap] |
| rs17125877 | 0.81[AFR][1000 genomes] |
| rs17125897 | 0.81[AFR][1000 genomes] |
| rs17125909 | 0.81[AFR][1000 genomes] |
| rs9668972 | 0.91[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1039741 | chr12:62046850-62491052 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv832435 | chr12:62407000-62601835 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
