Variant report

Variant	rs9746394
Chromosome Location	chr16:31300769-31300770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11863592	0.88[AMR][1000 genomes]
rs34072967	0.92[AMR][1000 genomes]
rs34594027	0.92[AMR][1000 genomes]
rs34927056	0.92[AMR][1000 genomes]
rs35466388	0.92[AMR][1000 genomes]
rs41477949	0.84[AMR][1000 genomes]
rs7499077	0.92[AMR][1000 genomes]
rs8061729	0.83[AMR][1000 genomes]
rs9925985	0.92[AMR][1000 genomes]
rs9937837	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
2	nsv1059459	chr16:31299088-31462251	Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv542901	chr16:31299088-31462251	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31290000-31301400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr16:31290000-31310200	Weak transcription	Spleen	Spleen
3	chr16:31296800-31301200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr16:31296800-31308800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr16:31298000-31301600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr16:31298000-31303800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr16:31298400-31301800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr16:31299600-31301400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr16:31299800-31301400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr16:31299800-31302800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr16:31300000-31300800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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