Variant report

Variant	rs9937837
Chromosome Location	chr16:31298939-31298940
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:31281353..31282855-chr16:31297634..31299746,2	MCF-7	breast:
2	chr16:31190670..31192586-chr16:31298518..31300607,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089280	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11150615	1.00[CHB][hapmap]
rs1143678	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1143683	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11574636	1.00[CHB][hapmap]
rs11574637	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11860650	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11863592	0.93[AMR][1000 genomes]
rs12918549	1.00[ASN][1000 genomes]
rs12928810	1.00[CHB][hapmap]
rs12930660	1.00[ASN][1000 genomes]
rs13338069	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2230428	1.00[ASN][1000 genomes]
rs34072967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34594027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34927056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35466388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41477949	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4548893	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4632147	1.00[CHB][hapmap]
rs6565228	1.00[CHB][hapmap]
rs7184677	1.00[CHB][hapmap]
rs7190018	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7190807	1.00[CHB][hapmap]
rs7193268	1.00[CHB][hapmap]
rs7499077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8061729	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9746394	0.92[AMR][1000 genomes]
rs9888739	1.00[CHD][hapmap]
rs9888879	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs9925985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9933520	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs9938063	1.00[CHB][hapmap];1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Systemic lupus erythematosus	23273568	GWAS catalog

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9937837	FUS	cis	cerebellum	SCAN
rs9937837	STX1B	cis	cerebellum	SCAN
rs9937837	TBX6	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31290000-31301400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr16:31290000-31310200	Weak transcription	Spleen	Spleen
3	chr16:31293600-31299800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr16:31294600-31300000	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr16:31295200-31299800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr16:31295600-31299600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr16:31296800-31301200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr16:31296800-31308800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr16:31298000-31301600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr16:31298000-31303800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr16:31298200-31299000	Flanking Active TSS	GM12878-XiMat	blood
12	chr16:31298400-31301800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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