Variant report
Variant | rs974981 |
---|---|
Chromosome Location | chr3:98707979-98707980 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1036674 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1082401 | 0.91[AFR][1000 genomes] |
rs10935512 | 1.00[AMR][1000 genomes] |
rs1095913 | 1.00[AMR][1000 genomes] |
rs1095914 | 1.00[AMR][1000 genomes] |
rs1351496 | 1.00[AMR][1000 genomes] |
rs1383908 | 1.00[AMR][1000 genomes] |
rs1383911 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1440157 | 1.00[AMR][1000 genomes] |
rs1531736 | 1.00[AMR][1000 genomes] |
rs1564544 | 0.81[AFR][1000 genomes] |
rs1600787 | 0.93[AFR][1000 genomes] |
rs1600788 | 1.00[AMR][1000 genomes] |
rs1822019 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1972432 | 1.00[AMR][1000 genomes] |
rs2099738 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2119189 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2128053 | 1.00[AMR][1000 genomes] |
rs2173598 | 1.00[AMR][1000 genomes] |
rs2439227 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2439230 | 1.00[AMR][1000 genomes] |
rs2439233 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2439234 | 1.00[AMR][1000 genomes] |
rs2439235 | 1.00[AMR][1000 genomes] |
rs2448985 | 1.00[AMR][1000 genomes] |
rs2449047 | 1.00[AMR][1000 genomes] |
rs2454672 | 1.00[AMR][1000 genomes] |
rs2454675 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2454681 | 1.00[AMR][1000 genomes] |
rs2454683 | 1.00[AMR][1000 genomes] |
rs2454690 | 1.00[AMR][1000 genomes] |
rs2470828 | 1.00[AMR][1000 genomes] |
rs2470839 | 1.00[AMR][1000 genomes] |
rs2470850 | 1.00[AMR][1000 genomes] |
rs2470856 | 1.00[AMR][1000 genomes] |
rs2470858 | 1.00[AMR][1000 genomes] |
rs2470866 | 1.00[AMR][1000 genomes] |
rs2470868 | 1.00[AMR][1000 genomes] |
rs2470874 | 1.00[AMR][1000 genomes] |
rs2470883 | 1.00[AMR][1000 genomes] |
rs278375 | 1.00[AMR][1000 genomes] |
rs278377 | 1.00[AMR][1000 genomes] |
rs278378 | 1.00[AMR][1000 genomes] |
rs278384 | 1.00[AMR][1000 genomes] |
rs278385 | 1.00[AMR][1000 genomes] |
rs278386 | 1.00[AMR][1000 genomes] |
rs278389 | 1.00[AMR][1000 genomes] |
rs2922213 | 1.00[AMR][1000 genomes] |
rs2929488 | 0.93[AFR][1000 genomes] |
rs4273318 | 1.00[AMR][1000 genomes] |
rs4857107 | 1.00[AMR][1000 genomes] |
rs5013928 | 1.00[AMR][1000 genomes] |
rs6440232 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7373983 | 1.00[AMR][1000 genomes] |
rs7626395 | 1.00[AMR][1000 genomes] |
rs7630797 | 1.00[AMR][1000 genomes] |
rs774549 | 0.91[AFR][1000 genomes] |
rs828604 | 1.00[AMR][1000 genomes] |
rs828606 | 1.00[AMR][1000 genomes] |
rs828607 | 1.00[AMR][1000 genomes] |
rs828619 | 1.00[AMR][1000 genomes] |
rs828620 | 1.00[AMR][1000 genomes] |
rs828622 | 1.00[AMR][1000 genomes] |
rs828623 | 1.00[AMR][1000 genomes] |
rs828624 | 1.00[AMR][1000 genomes] |
rs866873 | 1.00[AMR][1000 genomes] |
rs965757 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv591065 | chr3:98204198-98766326 | Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
2 | nsv1007140 | chr3:98421229-99202458 | Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
3 | nsv536663 | chr3:98421229-99202458 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
4 | nsv877214 | chr3:98445324-98738006 | Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
5 | nsv1007486 | chr3:98597738-99249081 | Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:98705000-98713000 | Weak transcription | HSMM | muscle |
2 | chr3:98705200-98712600 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
3 | chr3:98705400-98710400 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
4 | chr3:98705600-98716400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
5 | chr3:98706200-98708000 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
6 | chr3:98706200-98712400 | Weak transcription | NHDF-Ad | bronchial |
7 | chr3:98706400-98710400 | Weak transcription | A549 | lung |