Variant report

Variant	rs9755836
Chromosome Location	chr3:17630499-17630500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10510476	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17616000-17663600	Weak transcription	Left Ventricle	heart
2	chr3:17619800-17631600	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:17620000-17631600	Weak transcription	Brain Substantia Nigra	brain
4	chr3:17621600-17631400	Weak transcription	Fetal Thymus	thymus
5	chr3:17622000-17630800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:17622000-17632200	Weak transcription	Primary T cells from cord blood	blood
7	chr3:17622200-17631200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr3:17622200-17638800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr3:17622600-17631200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr3:17622600-17631600	Weak transcription	Primary B cells from cord blood	blood
11	chr3:17622800-17631000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:17623600-17631400	Weak transcription	Fetal Lung	lung
13	chr3:17623800-17631400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:17625400-17633000	Weak transcription	Psoas Muscle	Psoas
15	chr3:17626600-17631600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr3:17627000-17631800	Weak transcription	Liver	Liver
17	chr3:17627600-17631400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr3:17627600-17631800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:17627800-17631000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:17627800-17638800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:17628000-17631000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:17628200-17631600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:17628400-17631600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr3:17630000-17630600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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