Variant report

Variant	rs9765
Chromosome Location	chr1:169101526-169101527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169075106..169077398-chr1:169100554..169103661,3	MCF-7	breast:
2	chr1:169098857..169100595-chr1:169101188..169104374,3	MCF-7	breast:
3	chr1:169098028..169100792-chr1:169101427..169102956,2	K562	blood:
4	chr1:169074264..169079348-chr1:169101298..169105278,6	MCF-7	breast:
5	chr1:169099064..169101885-chr1:169111160..169113548,2	K562	blood:
6	chr1:169092696..169095785-chr1:169096212..169101951,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143153	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1138486	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv831858	chr1:169022383-169179068	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169079800-169105800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr1:169085400-169102200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:169086200-169102000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:169086200-169102000	Weak transcription	GM12878-XiMat	blood
5	chr1:169086200-169102400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr1:169086600-169103200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:169086600-169103400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:169089600-169101600	Genic enhancers	A549	lung
9	chr1:169089600-169103400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:169090000-169103800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:169090400-169103200	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr1:169091000-169102200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:169091000-169102200	Strong transcription	HepG2	liver
14	chr1:169091000-169102800	Strong transcription	Hela-S3	cervix
15	chr1:169091200-169124600	Weak transcription	NHLF	lung
16	chr1:169091400-169102200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:169091400-169103200	Strong transcription	Liver	Liver
18	chr1:169091400-169103400	Strong transcription	Duodenum Mucosa	Duodenum
19	chr1:169091600-169102000	Weak transcription	Pancreas	Pancrea
20	chr1:169091600-169110000	Weak transcription	Spleen	Spleen
21	chr1:169091600-169120400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:169091600-169120600	Weak transcription	Lung	lung
23	chr1:169091800-169104200	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr1:169091800-169137600	Weak transcription	Esophagus	oesophagus
25	chr1:169092200-169102400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr1:169092400-169106200	Weak transcription	Gastric	stomach
27	chr1:169092600-169103600	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr1:169093200-169103200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr1:169093400-169102000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr1:169093400-169102000	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr1:169093400-169102800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:169093600-169102200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr1:169093600-169102400	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr1:169093800-169101600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr1:169093800-169102200	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr1:169093800-169102400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr1:169093800-169102600	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr1:169094000-169101600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr1:169094600-169104000	Genic enhancers	Brain Hippocampus Middle	brain
40	chr1:169095000-169112600	Weak transcription	Stomach Mucosa	stomach
41	chr1:169095800-169106200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr1:169096600-169137400	Weak transcription	Fetal Stomach	stomach
43	chr1:169096800-169108600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr1:169097000-169130000	Weak transcription	Ovary	ovary
45	chr1:169097400-169102000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr1:169097600-169108200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr1:169097800-169101600	Strong transcription	Dnd41	blood
48	chr1:169098200-169102600	Weak transcription	Adipose Nuclei	Adipose
49	chr1:169098200-169103400	Weak transcription	Fetal Brain Male	brain
50	chr1:169098200-169105000	Weak transcription	Right Ventricle	heart

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