The 2.0 version of rSNPBase

Variant report

Variant rs1138486
Chromosome Location chr1:169101935-169101936
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169079800-169105800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
2 chr1:169085400-169102200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:169086200-169102000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
4 chr1:169086200-169102000 Weak transcription GM12878-XiMat blood
5 chr1:169086200-169102400 Weak transcription Monocytes-CD14+_RO01746 blood
6 chr1:169086600-169103200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
7 chr1:169086600-169103400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
8 chr1:169089600-169103400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr1:169090000-169103800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr1:169090400-169103200 Strong transcription Sigmoid Colon Sigmoid Colon
11 chr1:169091000-169102200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
12 chr1:169091000-169102200 Strong transcription HepG2 liver
13 chr1:169091000-169102800 Strong transcription Hela-S3 cervix
14 chr1:169091200-169124600 Weak transcription NHLF lung
15 chr1:169091400-169102200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr1:169091400-169103200 Strong transcription Liver Liver
17 chr1:169091400-169103400 Strong transcription Duodenum Mucosa Duodenum
18 chr1:169091600-169102000 Weak transcription Pancreas Pancrea
19 chr1:169091600-169110000 Weak transcription Spleen Spleen
20 chr1:169091600-169120400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr1:169091600-169120600 Weak transcription Lung lung
22 chr1:169091800-169104200 Strong transcription Rectal Mucosa Donor 31 rectum
23 chr1:169091800-169137600 Weak transcription Esophagus oesophagus
24 chr1:169092200-169102400 Weak transcription iPS-15b Cell Line embryonic stem cell
25 chr1:169092400-169106200 Weak transcription Gastric stomach
26 chr1:169092600-169103600 Strong transcription Rectal Mucosa Donor 29 rectum
27 chr1:169093200-169103200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
28 chr1:169093400-169102000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
29 chr1:169093400-169102000 Strong transcription Duodenum Smooth Muscle Duodenum
30 chr1:169093400-169102800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr1:169093600-169102200 Strong transcription iPS-20b Cell Line embryonic stem cell
32 chr1:169093600-169102400 Strong transcription HUES48 Cell Line embryonic stem cell
33 chr1:169093800-169102200 Strong transcription HUES6 Cell Line embryonic stem cell
34 chr1:169093800-169102400 Strong transcription Fetal Adrenal Gland Adrenal Gland
35 chr1:169093800-169102600 Strong transcription HUES64 Cell Line embryonic stem cell
36 chr1:169094600-169104000 Genic enhancers Brain Hippocampus Middle brain
37 chr1:169095000-169112600 Weak transcription Stomach Mucosa stomach
38 chr1:169095800-169106200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr1:169096600-169137400 Weak transcription Fetal Stomach stomach
40 chr1:169096800-169108600 Weak transcription Primary T regulatory cells fromperipheralblood blood
41 chr1:169097000-169130000 Weak transcription Ovary ovary
42 chr1:169097400-169102000 Strong transcription Primary hematopoietic stem cells short term culture blood
43 chr1:169097600-169108200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
44 chr1:169098200-169102600 Weak transcription Adipose Nuclei Adipose
45 chr1:169098200-169103400 Weak transcription Fetal Brain Male brain
46 chr1:169098200-169105000 Weak transcription Right Ventricle heart
47 chr1:169098800-169102400 Strong transcription Left Ventricle heart
48 chr1:169098800-169112200 Weak transcription HSMM muscle
49 chr1:169099000-169102000 Weak transcription Pancreatic Islets Pancreatic Islet
50 chr1:169099000-169105000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015