Variant report

Variant	rs34605921
Chromosome Location	chr1:169143794-169143795
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 154 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:149)

rs_ID	r²[population]
rs10800403	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10800406	0.93[ASN][1000 genomes]
rs10800407	0.93[ASN][1000 genomes]
rs10800410	0.91[ASN][1000 genomes]
rs10800411	0.91[ASN][1000 genomes]
rs1080267	0.89[EUR][1000 genomes]
rs10919073	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10919076	0.93[ASN][1000 genomes]
rs10919082	1.00[ASN][1000 genomes]
rs10919083	1.00[ASN][1000 genomes]
rs10919084	1.00[ASN][1000 genomes]
rs10919086	1.00[ASN][1000 genomes]
rs10919090	0.91[ASN][1000 genomes]
rs10919094	0.91[ASN][1000 genomes]
rs1138486	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11801853	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11802117	1.00[ASN][1000 genomes]
rs11809180	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12057856	1.00[ASN][1000 genomes]
rs12065884	1.00[ASN][1000 genomes]
rs12066676	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12067018	1.00[ASN][1000 genomes]
rs12067072	0.93[ASN][1000 genomes]
rs12070626	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12071277	0.93[ASN][1000 genomes]
rs12072226	1.00[ASN][1000 genomes]
rs12072953	1.00[ASN][1000 genomes]
rs12075832	0.93[ASN][1000 genomes]
rs12076469	0.99[ASN][1000 genomes]
rs12076510	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12079745	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12082618	0.93[ASN][1000 genomes]
rs12082810	0.93[ASN][1000 genomes]
rs12083287	0.82[ASN][1000 genomes]
rs12084964	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12086104	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12086292	0.93[ASN][1000 genomes]
rs12086983	0.93[ASN][1000 genomes]
rs12089118	0.93[ASN][1000 genomes]
rs12095171	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12120493	1.00[ASN][1000 genomes]
rs12124144	1.00[ASN][1000 genomes]
rs12124168	1.00[ASN][1000 genomes]
rs12124744	0.92[ASN][1000 genomes]
rs12125921	1.00[ASN][1000 genomes]
rs12125985	1.00[ASN][1000 genomes]
rs12126032	0.93[ASN][1000 genomes]
rs12127305	0.93[ASN][1000 genomes]
rs12127613	0.98[ASN][1000 genomes]
rs12129969	0.91[ASN][1000 genomes]
rs12129979	0.89[ASN][1000 genomes]
rs12130764	0.91[ASN][1000 genomes]
rs12135928	0.93[ASN][1000 genomes]
rs12140967	0.93[ASN][1000 genomes]
rs12143131	0.93[ASN][1000 genomes]
rs12143135	0.81[ASN][1000 genomes]
rs12143965	0.99[ASN][1000 genomes]
rs12144705	0.96[ASN][1000 genomes]
rs12145939	0.93[ASN][1000 genomes]
rs12354315	0.93[ASN][1000 genomes]
rs12562404	1.00[ASN][1000 genomes]
rs12564558	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12564596	1.00[ASN][1000 genomes]
rs12568636	0.91[ASN][1000 genomes]
rs12724812	1.00[ASN][1000 genomes]
rs12724863	0.91[ASN][1000 genomes]
rs12734206	0.91[ASN][1000 genomes]
rs12735503	1.00[ASN][1000 genomes]
rs12736110	1.00[ASN][1000 genomes]
rs12736723	0.91[ASN][1000 genomes]
rs12744184	1.00[ASN][1000 genomes]
rs12744341	1.00[ASN][1000 genomes]
rs12744655	0.96[ASN][1000 genomes]
rs12745732	0.80[ASN][1000 genomes]
rs12747242	0.93[ASN][1000 genomes]
rs12755385	1.00[ASN][1000 genomes]
rs12756799	1.00[ASN][1000 genomes]
rs12758208	0.93[ASN][1000 genomes]
rs1320965	0.93[ASN][1000 genomes]
rs1320966	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1320967	0.93[ASN][1000 genomes]
rs1320968	0.93[ASN][1000 genomes]
rs1358712	0.93[ASN][1000 genomes]
rs1419323	0.93[ASN][1000 genomes]
rs1419324	0.93[ASN][1000 genomes]
rs1830492	0.89[ASN][1000 genomes]
rs1830493	0.85[ASN][1000 genomes]
rs1830494	0.90[ASN][1000 genomes]
rs1830495	0.99[ASN][1000 genomes]
rs2032044	0.93[ASN][1000 genomes]
rs2050119	1.00[ASN][1000 genomes]
rs2143287	0.93[ASN][1000 genomes]
rs2179492	0.91[ASN][1000 genomes]
rs2420010	0.90[ASN][1000 genomes]
rs34250651	1.00[ASN][1000 genomes]
rs34645703	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34847919	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35037551	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35631014	1.00[ASN][1000 genomes]
rs35774511	1.00[ASN][1000 genomes]
rs3737681	1.00[ASN][1000 genomes]
rs3766045	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3766053	0.93[ASN][1000 genomes]
rs3766054	0.93[ASN][1000 genomes]
rs3766055	0.93[ASN][1000 genomes]
rs3766059	1.00[ASN][1000 genomes]
rs3766060	1.00[ASN][1000 genomes]
rs3766061	0.86[ASN][1000 genomes]
rs3766062	0.93[ASN][1000 genomes]
rs3766063	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3766065	0.91[ASN][1000 genomes]
rs3766066	0.91[ASN][1000 genomes]
rs3766067	0.91[ASN][1000 genomes]
rs3766069	0.91[ASN][1000 genomes]
rs3766070	0.91[ASN][1000 genomes]
rs3766071	0.91[ASN][1000 genomes]
rs3820053	1.00[ASN][1000 genomes]
rs3820055	0.99[ASN][1000 genomes]
rs3820056	0.99[ASN][1000 genomes]
rs4140540	0.91[ASN][1000 genomes]
rs4656653	0.93[ASN][1000 genomes]
rs4656654	1.00[ASN][1000 genomes]
rs4656655	1.00[ASN][1000 genomes]
rs4656656	1.00[ASN][1000 genomes]
rs4656659	0.93[ASN][1000 genomes]
rs4656660	0.89[ASN][1000 genomes]
rs61806209	0.97[ASN][1000 genomes]
rs6695177	1.00[ASN][1000 genomes]
rs6695252	1.00[ASN][1000 genomes]
rs67485965	1.00[ASN][1000 genomes]
rs72637225	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs745922	0.93[ASN][1000 genomes]
rs7518554	1.00[ASN][1000 genomes]
rs7526721	0.81[ASN][1000 genomes]
rs7529937	0.90[ASN][1000 genomes]
rs7541564	1.00[ASN][1000 genomes]
rs7541675	1.00[ASN][1000 genomes]
rs7541700	1.00[ASN][1000 genomes]
rs7552484	0.93[ASN][1000 genomes]
rs909929	0.90[ASN][1000 genomes]
rs909930	0.91[ASN][1000 genomes]
rs909931	0.91[ASN][1000 genomes]
rs932394	1.00[ASN][1000 genomes]
rs932395	1.00[ASN][1000 genomes]
rs958581	1.00[ASN][1000 genomes]
rs9887854	0.93[ASN][1000 genomes]
rs9887857	0.93[ASN][1000 genomes]
rs9887903	0.93[ASN][1000 genomes]
rs9887916	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv831858	chr1:169022383-169179068	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169130400-169195200	Weak transcription	Pancreas	Pancrea
2	chr1:169131400-169149400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:169137600-169158000	Weak transcription	Primary T cells from cord blood	blood
4	chr1:169139000-169147000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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