Variant report

Variant	rs7526721
Chromosome Location	chr1:169159866-169159867
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 143 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs10800410	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10800411	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10800415	0.85[AFR][1000 genomes]
rs10800417	0.85[AFR][1000 genomes]
rs10800419	0.85[AFR][1000 genomes]
rs10800420	0.83[AFR][1000 genomes]
rs1080266	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10919082	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10919083	0.81[ASN][1000 genomes]
rs10919084	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10919086	0.81[ASN][1000 genomes]
rs10919090	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10919094	0.90[ASN][1000 genomes]
rs10919095	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10919106	0.83[AFR][1000 genomes]
rs10919107	0.83[AFR][1000 genomes]
rs10919108	0.83[AFR][1000 genomes]
rs11802117	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11802143	0.83[AFR][1000 genomes]
rs11808938	0.85[AFR][1000 genomes]
rs11809256	0.85[AFR][1000 genomes]
rs12057856	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12059281	0.83[AFR][1000 genomes]
rs12065884	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12067018	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12067072	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12071277	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12072226	0.81[ASN][1000 genomes]
rs12072953	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12075832	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12076469	0.82[ASN][1000 genomes]
rs12076510	0.90[ASN][1000 genomes]
rs12081283	0.85[AFR][1000 genomes]
rs12083287	0.89[AFR][1000 genomes]
rs12084549	0.85[AFR][1000 genomes]
rs12086292	0.88[ASN][1000 genomes]
rs12120493	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12121395	0.82[AFR][1000 genomes]
rs12123168	0.83[AFR][1000 genomes]
rs12124144	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12124168	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12124744	0.87[ASN][1000 genomes]
rs12125921	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12125985	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12126032	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12126266	0.83[AFR][1000 genomes]
rs12127305	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12129969	0.90[ASN][1000 genomes]
rs12129979	0.87[ASN][1000 genomes]
rs12130764	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12141151	0.85[AFR][1000 genomes]
rs12141917	0.85[AFR][1000 genomes]
rs12143965	0.80[ASN][1000 genomes]
rs12144705	0.84[AFR][1000 genomes]
rs12145969	0.85[AFR][1000 genomes]
rs12562404	0.81[ASN][1000 genomes]
rs12564558	0.90[ASN][1000 genomes]
rs12564596	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12568636	0.90[ASN][1000 genomes]
rs12724093	0.83[AFR][1000 genomes]
rs12724812	0.81[ASN][1000 genomes]
rs12724863	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12734206	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12735503	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12736110	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12736723	0.90[ASN][1000 genomes]
rs12741540	0.83[AFR][1000 genomes]
rs12744184	0.81[ASN][1000 genomes]
rs12744341	0.81[ASN][1000 genomes]
rs12745997	0.83[AFR][1000 genomes]
rs12747242	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12751062	0.83[AFR][1000 genomes]
rs12755385	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12756799	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1830494	0.80[AFR][1000 genomes]
rs1830495	0.80[ASN][1000 genomes]
rs2012763	0.82[AFR][1000 genomes]
rs2032044	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2050119	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2179492	0.90[ASN][1000 genomes]
rs2300159	0.83[AFR][1000 genomes]
rs2420012	0.85[AFR][1000 genomes]
rs34250651	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs34605921	0.81[ASN][1000 genomes]
rs35631014	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs35774511	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs36079696	0.83[AFR][1000 genomes]
rs3737681	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3753297	0.83[AFR][1000 genomes]
rs3753300	0.85[AFR][1000 genomes]
rs3766059	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3766060	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3766061	0.87[AFR][1000 genomes]
rs3766062	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3766063	0.88[ASN][1000 genomes]
rs3766065	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3766066	0.90[ASN][1000 genomes]
rs3766067	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3766069	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3766070	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3766071	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3820053	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3820055	0.80[ASN][1000 genomes]
rs3820056	0.87[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4140540	0.90[ASN][1000 genomes]
rs4385775	0.85[AFR][1000 genomes]
rs4445529	0.83[AFR][1000 genomes]
rs4656181	0.83[AFR][1000 genomes]
rs4656654	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4656655	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4656656	0.81[ASN][1000 genomes]
rs4656659	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4656660	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4656662	0.85[AFR][1000 genomes]
rs4656666	0.80[AFR][1000 genomes]
rs4656667	0.83[AFR][1000 genomes]
rs61806209	0.83[AFR][1000 genomes]
rs6679084	0.86[AFR][1000 genomes]
rs6688038	0.85[AFR][1000 genomes]
rs6688139	0.85[AFR][1000 genomes]
rs6695177	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6695252	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6701686	0.80[AFR][1000 genomes]
rs6703463	0.83[AFR][1000 genomes]
rs6704482	0.85[AFR][1000 genomes]
rs67485965	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs72637225	0.81[ASN][1000 genomes]
rs72700019	0.82[AFR][1000 genomes]
rs7518554	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7541564	0.81[ASN][1000 genomes]
rs7541675	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7541700	0.81[ASN][1000 genomes]
rs909929	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs909930	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs909931	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs932394	0.81[ASN][1000 genomes]
rs932395	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs958581	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv831858	chr1:169022383-169179068	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv5790	chr1:169159784-169160583	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7526721	NME7	cis	Artery Tibial	GTEx
rs7526721	NME7	cis	Nerve Tibial	GTEx
rs7526721	NME7	cis	Thyroid	GTEx
rs7526721	NME7	Cis_1M	lymphoblastoid	RTeQTL
rs7526721	NME7	cis	Esophagus Muscularis	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169130400-169195200	Weak transcription	Pancreas	Pancrea
2	chr1:169150400-169162600	Weak transcription	Psoas Muscle	Psoas
3	chr1:169155600-169162800	Weak transcription	A549	lung
4	chr1:169158000-169162200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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