Variant report

Variant	rs3766063
Chromosome Location	chr1:169154574-169154575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169147842..169150114-chr1:169152591..169155331,2	K562	blood:

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs10800403	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10800406	0.86[ASN][1000 genomes]
rs10800407	0.86[ASN][1000 genomes]
rs10800410	0.98[ASN][1000 genomes]
rs10800411	0.98[ASN][1000 genomes]
rs1080267	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10919073	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10919076	0.86[ASN][1000 genomes]
rs10919082	0.93[ASN][1000 genomes]
rs10919083	0.93[ASN][1000 genomes]
rs10919084	0.93[ASN][1000 genomes]
rs10919086	0.93[ASN][1000 genomes]
rs10919090	0.98[ASN][1000 genomes]
rs10919094	0.98[ASN][1000 genomes]
rs1138486	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11801853	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11802117	0.93[ASN][1000 genomes]
rs11809180	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12057856	0.93[ASN][1000 genomes]
rs12065884	0.93[ASN][1000 genomes]
rs12066676	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12067018	0.93[ASN][1000 genomes]
rs12067072	1.00[ASN][1000 genomes]
rs12070626	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12071277	1.00[ASN][1000 genomes]
rs12072226	0.93[ASN][1000 genomes]
rs12072953	0.93[ASN][1000 genomes]
rs12075832	1.00[ASN][1000 genomes]
rs12076469	0.94[ASN][1000 genomes]
rs12076510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12079745	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12082618	0.86[ASN][1000 genomes]
rs12082810	0.86[ASN][1000 genomes]
rs12083287	0.88[ASN][1000 genomes]
rs12084964	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12086104	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12086292	1.00[ASN][1000 genomes]
rs12086983	0.86[ASN][1000 genomes]
rs12089118	0.86[ASN][1000 genomes]
rs12095171	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12120493	0.93[ASN][1000 genomes]
rs12124144	0.93[ASN][1000 genomes]
rs12124168	0.93[ASN][1000 genomes]
rs12124744	0.99[ASN][1000 genomes]
rs12125921	0.93[ASN][1000 genomes]
rs12125985	0.93[ASN][1000 genomes]
rs12126032	1.00[ASN][1000 genomes]
rs12127305	1.00[ASN][1000 genomes]
rs12127613	0.91[ASN][1000 genomes]
rs12129969	0.98[ASN][1000 genomes]
rs12129979	0.96[ASN][1000 genomes]
rs12130764	0.98[ASN][1000 genomes]
rs12135928	0.86[ASN][1000 genomes]
rs12140967	0.86[ASN][1000 genomes]
rs12143131	0.86[ASN][1000 genomes]
rs12143965	0.92[ASN][1000 genomes]
rs12144705	0.89[ASN][1000 genomes]
rs12145939	0.86[ASN][1000 genomes]
rs12354315	0.86[ASN][1000 genomes]
rs12562404	0.93[ASN][1000 genomes]
rs12564558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12564596	0.93[ASN][1000 genomes]
rs12568636	0.98[ASN][1000 genomes]
rs12724812	0.93[ASN][1000 genomes]
rs12724863	0.98[ASN][1000 genomes]
rs12734206	0.98[ASN][1000 genomes]
rs12735503	0.93[ASN][1000 genomes]
rs12736110	0.93[ASN][1000 genomes]
rs12736723	0.98[ASN][1000 genomes]
rs12744184	0.93[ASN][1000 genomes]
rs12744341	0.93[ASN][1000 genomes]
rs12744655	0.89[ASN][1000 genomes]
rs12747242	1.00[ASN][1000 genomes]
rs12755385	0.93[ASN][1000 genomes]
rs12756799	0.93[ASN][1000 genomes]
rs12758208	0.86[ASN][1000 genomes]
rs1320965	0.86[ASN][1000 genomes]
rs1320966	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1320967	0.86[ASN][1000 genomes]
rs1320968	0.86[ASN][1000 genomes]
rs1358712	0.86[ASN][1000 genomes]
rs1419323	0.86[ASN][1000 genomes]
rs1419324	0.86[ASN][1000 genomes]
rs1830492	0.83[ASN][1000 genomes]
rs1830493	0.80[ASN][1000 genomes]
rs1830494	0.83[ASN][1000 genomes]
rs1830495	0.92[ASN][1000 genomes]
rs2032044	1.00[ASN][1000 genomes]
rs2050119	0.93[ASN][1000 genomes]
rs2143287	0.86[ASN][1000 genomes]
rs2179492	0.98[ASN][1000 genomes]
rs2420010	0.84[ASN][1000 genomes]
rs34250651	0.93[ASN][1000 genomes]
rs34605921	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34645703	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34847919	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35037551	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35631014	0.93[ASN][1000 genomes]
rs35774511	0.93[ASN][1000 genomes]
rs3737681	0.93[ASN][1000 genomes]
rs3766045	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3766053	0.86[ASN][1000 genomes]
rs3766054	0.86[ASN][1000 genomes]
rs3766055	0.86[ASN][1000 genomes]
rs3766059	0.93[ASN][1000 genomes]
rs3766060	0.93[ASN][1000 genomes]
rs3766062	1.00[ASN][1000 genomes]
rs3766065	0.98[ASN][1000 genomes]
rs3766066	0.98[ASN][1000 genomes]
rs3766067	0.98[ASN][1000 genomes]
rs3766069	0.98[ASN][1000 genomes]
rs3766070	0.98[ASN][1000 genomes]
rs3766071	0.98[ASN][1000 genomes]
rs3820053	0.93[ASN][1000 genomes]
rs3820055	0.92[ASN][1000 genomes]
rs3820056	0.92[ASN][1000 genomes]
rs4140540	0.98[ASN][1000 genomes]
rs4656653	0.86[ASN][1000 genomes]
rs4656654	0.93[ASN][1000 genomes]
rs4656655	0.93[ASN][1000 genomes]
rs4656656	0.93[ASN][1000 genomes]
rs4656659	1.00[ASN][1000 genomes]
rs4656660	0.96[ASN][1000 genomes]
rs61806209	0.90[ASN][1000 genomes]
rs6695177	0.93[ASN][1000 genomes]
rs6695252	0.93[ASN][1000 genomes]
rs67485965	0.93[ASN][1000 genomes]
rs72637225	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs745922	0.86[ASN][1000 genomes]
rs7518554	0.93[ASN][1000 genomes]
rs7526721	0.88[ASN][1000 genomes]
rs7529937	0.83[ASN][1000 genomes]
rs7541564	0.93[ASN][1000 genomes]
rs7541675	0.93[ASN][1000 genomes]
rs7541700	0.93[ASN][1000 genomes]
rs7552484	0.86[ASN][1000 genomes]
rs909929	0.96[ASN][1000 genomes]
rs909930	0.98[ASN][1000 genomes]
rs909931	0.98[ASN][1000 genomes]
rs932394	0.93[ASN][1000 genomes]
rs932395	0.93[ASN][1000 genomes]
rs958581	0.93[ASN][1000 genomes]
rs9887854	0.86[ASN][1000 genomes]
rs9887857	0.86[ASN][1000 genomes]
rs9887903	0.86[ASN][1000 genomes]
rs9887916	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv831858	chr1:169022383-169179068	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169130400-169195200	Weak transcription	Pancreas	Pancrea
2	chr1:169137600-169158000	Weak transcription	Primary T cells from cord blood	blood
3	chr1:169150400-169162600	Weak transcription	Psoas Muscle	Psoas
4	chr1:169154000-169154800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:169154200-169154600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr1:169154200-169154800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:169154200-169155600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:169154200-169155600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr1:169154400-169155000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:169154400-169155400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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