The 2.0 version of rSNPBase

Variant report

Variant rs12089118
Chromosome Location chr1:169118308-169118309
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:31 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169091200-169124600 Weak transcription NHLF lung
2 chr1:169091600-169120400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:169091600-169120600 Weak transcription Lung lung
4 chr1:169091800-169137600 Weak transcription Esophagus oesophagus
5 chr1:169096600-169137400 Weak transcription Fetal Stomach stomach
6 chr1:169097000-169130000 Weak transcription Ovary ovary
7 chr1:169100800-169141400 Weak transcription Fetal Muscle Leg muscle
8 chr1:169101000-169137000 Weak transcription Primary T cells from cord blood blood
9 chr1:169102400-169120600 Weak transcription Left Ventricle heart
10 chr1:169103400-169130200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:169104800-169120400 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr1:169104800-169142800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr1:169110400-169121800 Enhancers Fetal Intestine Small intestine
14 chr1:169112600-169118400 Enhancers Stomach Mucosa stomach
15 chr1:169112800-169120600 Weak transcription Psoas Muscle Psoas
16 chr1:169115000-169120600 Enhancers HepG2 liver
17 chr1:169115000-169121200 Enhancers Duodenum Mucosa Duodenum
18 chr1:169115000-169121800 Enhancers Fetal Intestine Large intestine
19 chr1:169115800-169130400 Weak transcription Brain Hippocampus Middle brain
20 chr1:169116200-169130200 Weak transcription Brain Anterior Caudate brain
21 chr1:169116400-169126600 Weak transcription Right Atrium heart
22 chr1:169116400-169139400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
23 chr1:169117400-169118400 Enhancers Skeletal Muscle Male skeletal muscle
24 chr1:169117400-169118400 Flanking Active TSS A549 lung
25 chr1:169117600-169120400 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr1:169118000-169118400 Flanking Active TSS Liver Liver
27 chr1:169118000-169118400 Enhancers Small Intestine intestine
28 chr1:169118000-169119400 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr1:169118000-169120200 Weak transcription Rectal Mucosa Donor 29 rectum
30 chr1:169118000-169137000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr1:169118200-169130400 Weak transcription Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015