Variant report

Variant	rs9767548
Chromosome Location	chr6:117833868-117833869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:117826638..117828169-chr6:117832301..117834365,2	K562	blood:
2	chr6:117833098..117835589-chr6:117838290..117840609,2	K562	blood:
3	chr6:117833098..117835004-chr6:117837097..117839790,2	K562	blood:
4	chr6:117828659..117831265-chr6:117832273..117834638,2	K562	blood:
5	chr6:117824027..117828169-chr6:117829590..117834365,6	K562	blood:

Variant related genes	Relation type
ENSG00000164465	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11153670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17079286	1.00[CEU][hapmap]
rs60531544	0.86[ASN][1000 genomes]
rs73512265	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9285421	1.00[GIH][hapmap];0.83[MKK][hapmap]
rs9320607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9374664	1.00[CEU][hapmap]
rs9374665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374666	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9387486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401009	1.00[CEU][hapmap]
rs9689345	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689948	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117805200-117851200	Weak transcription	Right Ventricle	heart
2	chr6:117816400-117841400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:117819800-117834200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:117819800-117868800	Weak transcription	Spleen	Spleen
5	chr6:117821600-117868800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:117821800-117843600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:117823200-117868800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:117823200-117869600	Weak transcription	Small Intestine	intestine
9	chr6:117826200-117842600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:117826200-117844800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:117826400-117859800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:117827000-117834200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:117827200-117841600	Weak transcription	Adipose Nuclei	Adipose
14	chr6:117827600-117851200	Weak transcription	Lung	lung
15	chr6:117828000-117834400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:117828000-117834400	Weak transcription	Psoas Muscle	Psoas
17	chr6:117828000-117836400	Weak transcription	Liver	Liver
18	chr6:117828000-117841400	Weak transcription	Left Ventricle	heart
19	chr6:117828000-117866200	Weak transcription	Esophagus	oesophagus
20	chr6:117828200-117841000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:117828200-117851000	Weak transcription	Right Atrium	heart
22	chr6:117828400-117834400	Weak transcription	HSMMtube	muscle
23	chr6:117828400-117851600	Weak transcription	NHLF	lung
24	chr6:117828800-117834000	Strong transcription	HSMM	muscle
25	chr6:117829000-117834600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:117830400-117834200	Weak transcription	Fetal Lung	lung
27	chr6:117830400-117834400	Weak transcription	Pancreas	Pancrea
28	chr6:117830400-117834600	Weak transcription	Fetal Intestine Large	intestine
29	chr6:117831000-117834400	Weak transcription	Fetal Intestine Small	intestine
30	chr6:117831000-117835400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:117831600-117834000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:117832000-117834400	Genic enhancers	Muscle Satellite Cultured Cells	--
33	chr6:117832000-117835000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:117832200-117834800	Enhancers	Osteobl	bone
35	chr6:117832200-117835200	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr6:117832400-117834400	Weak transcription	Fetal Stomach	stomach
37	chr6:117832400-117835400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:117832400-117835800	Enhancers	NH-A	brain
39	chr6:117832400-117841600	Weak transcription	HUVEC	blood vessel
40	chr6:117832600-117835800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:117833000-117834400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:117833000-117839200	Enhancers	HepG2	liver
43	chr6:117833200-117834000	Enhancers	HMEC	breast
44	chr6:117833400-117834000	Flanking Active TSS	A549	lung
45	chr6:117833400-117834400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:117833400-117834400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:117833400-117834800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:117833400-117834800	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr6:117833600-117834000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:117833600-117834000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links