Variant report

Variant	rs9783739
Chromosome Location	chr15:74233751-74233752
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr15:74232395-74233977	SK-N-SH	brain:	n/a	chr15:74233842-74233852 chr15:74233400-74233409
2	MAX	chr15:74233305-74233888	SK-N-SH	brain:	n/a	n/a
3	FOSL2	chr15:74233400-74233905	SK-N-SH	brain:	n/a	n/a
4	JUND	chr15:74233149-74233971	SK-N-SH	brain:	n/a	n/a
5	POLR2A	chr15:74232236-74234567	U87	brain:	n/a	n/a
6	RCOR1	chr15:74232553-74234146	IMR90	lung:	n/a	n/a
7	MAZ	chr15:74232601-74235292	IMR90	lung:	n/a	n/a
8	JUND	chr15:74233278-74233982	SK-N-SH	brain:	n/a	n/a
9	TCF12	chr15:74233113-74233898	SK-N-SH	brain:	n/a	chr15:74233482-74233489
10	TEAD4	chr15:74233189-74233951	SK-N-SH	brain:	n/a	n/a
11	POLR2A	chr15:74233277-74233817	SK-N-SH	brain:	n/a	n/a
12	CTCF	chr15:74233640-74233790	AG04449	skin:	n/a	n/a
13	MAX	chr15:74233008-74233924	SK-N-SH	brain:	n/a	n/a
14	RAD21	chr15:74233352-74233793	IMR90	lung:	n/a	n/a
15	TCF12	chr15:74232402-74234048	SK-N-SH	brain:	n/a	chr15:74232648-74232658 chr15:74233482-74233489
16	GATA3	chr15:74232450-74233976	SK-N-SH	brain:	n/a	chr15:74233842-74233852 chr15:74233400-74233409
17	POLR2A	chr15:74217872-74240199	U87	brain:	n/a	n/a
18	FOSL2	chr15:74233267-74233942	SK-N-SH	brain:	n/a	n/a
19	NFIC	chr15:74233074-74233953	SK-N-SH	brain:	n/a	n/a
20	REST	chr15:74233383-74233797	SK-N-SH	brain:	n/a	chr15:74233690-74233703
21	EP300	chr15:74233236-74234016	SK-N-SH	brain:	n/a	n/a
22	POLR2A	chr15:74215819-74242527	U87	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74214579..74216855-chr15:74233095..74234703,2	K562	blood:
2	chr15:74231331..74232913-chr15:74233031..74235989,2	K562	blood:

Variant related genes	Relation type
LOXL1	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10775207	0.90[EUR][1000 genomes]
rs10851865	1.00[EUR][1000 genomes]
rs12708513	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12917501	0.90[EUR][1000 genomes]
rs4243039	0.90[EUR][1000 genomes]
rs4243040	0.90[EUR][1000 genomes]
rs4243041	0.90[EUR][1000 genomes]
rs4423374	0.90[EUR][1000 genomes]
rs4497636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6495084	0.90[AFR][1000 genomes]
rs7173508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7173840	0.90[EUR][1000 genomes]
rs8027093	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74222600-74243200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:74227600-74236600	Weak transcription	Thymus	Thymus
3	chr15:74227800-74233800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:74228400-74239600	Weak transcription	Pancreas	Pancrea
5	chr15:74228800-74243200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:74229000-74236600	Weak transcription	Brain Substantia Nigra	brain
7	chr15:74229000-74243000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:74229200-74236400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:74229200-74236800	Weak transcription	Esophagus	oesophagus
10	chr15:74229200-74241000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:74229600-74237000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:74230000-74234000	Weak transcription	Lung	lung
13	chr15:74230000-74236400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:74230000-74236600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr15:74230000-74239200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr15:74230200-74236400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:74230400-74234200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:74230800-74233800	Genic enhancers	Stomach Smooth Muscle	stomach
19	chr15:74231400-74233800	Enhancers	Fetal Lung	lung
20	chr15:74231400-74234600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:74231400-74234600	Genic enhancers	Fetal Stomach	stomach
22	chr15:74231400-74235000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:74231400-74235000	Enhancers	Fetal Muscle Trunk	muscle
24	chr15:74231400-74235400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:74231400-74235400	Enhancers	Placenta Amnion	Placenta Amnion
26	chr15:74231400-74235600	Enhancers	Aorta	Aorta
27	chr15:74231400-74238000	Enhancers	Placenta	Placenta
28	chr15:74231600-74234400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr15:74231600-74234800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:74231600-74235200	Enhancers	Right Ventricle	heart
31	chr15:74231600-74235200	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr15:74231800-74235200	Enhancers	Fetal Heart	heart
33	chr15:74231800-74242800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr15:74232200-74234800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr15:74232200-74235600	Enhancers	Spleen	Spleen
36	chr15:74232400-74234000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr15:74232400-74236600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr15:74232600-74233800	Flanking Active TSS	Osteobl	bone
39	chr15:74232600-74239400	Weak transcription	Brain Anterior Caudate	brain
40	chr15:74232600-74243000	Weak transcription	Brain Hippocampus Middle	brain
41	chr15:74232800-74233800	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr15:74232800-74233800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr15:74232800-74234000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr15:74232800-74234000	Enhancers	HepG2	liver
45	chr15:74232800-74234200	Enhancers	Right Atrium	heart
46	chr15:74232800-74234400	Enhancers	Ovary	ovary
47	chr15:74232800-74234800	Enhancers	Fetal Muscle Leg	muscle
48	chr15:74232800-74235200	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr15:74232800-74235400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr15:74232800-74235400	Enhancers	Adipose Nuclei	Adipose

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