Variant report

Variant	rs10851865
Chromosome Location	chr15:74232497-74232498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74165797..74168180-chr15:74231250..74232878,2	MCF-7	breast:
2	chr15:74231523..74233258-chr15:74237856..74239596,2	MCF-7	breast:
3	chr15:74231331..74232913-chr15:74233031..74235989,2	K562	blood:
4	chr15:74231490..74233026-chr15:74235513..74237845,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167139	Chromatin interaction
ENSG00000129038	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10775207	0.90[EUR][1000 genomes]
rs11072449	0.97[AFR][1000 genomes]
rs12708513	1.00[EUR][1000 genomes]
rs12917501	0.90[EUR][1000 genomes]
rs4243039	0.90[EUR][1000 genomes]
rs4243040	0.90[EUR][1000 genomes]
rs4243041	0.90[EUR][1000 genomes]
rs4423374	0.90[EUR][1000 genomes]
rs4497636	0.90[EUR][1000 genomes]
rs7173508	0.90[EUR][1000 genomes]
rs7173840	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8027093	0.90[EUR][1000 genomes]
rs9783739	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74222400-74233200	Weak transcription	Fetal Thymus	thymus
2	chr15:74222600-74243200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:74227600-74233000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr15:74227600-74236600	Weak transcription	Thymus	Thymus
5	chr15:74227800-74233800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr15:74228200-74232800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:74228400-74232800	Weak transcription	Gastric	stomach
8	chr15:74228400-74239600	Weak transcription	Pancreas	Pancrea
9	chr15:74228600-74233200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr15:74228600-74233400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr15:74228800-74232800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:74228800-74243200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr15:74229000-74232800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr15:74229000-74232800	Weak transcription	Colon Smooth Muscle	Colon
15	chr15:74229000-74233400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:74229000-74236600	Weak transcription	Brain Substantia Nigra	brain
17	chr15:74229000-74243000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:74229200-74232800	Weak transcription	Adipose Nuclei	Adipose
19	chr15:74229200-74232800	Weak transcription	Fetal Muscle Leg	muscle
20	chr15:74229200-74232800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr15:74229200-74233000	Weak transcription	Fetal Intestine Small	intestine
22	chr15:74229200-74236400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr15:74229200-74236800	Weak transcription	Esophagus	oesophagus
24	chr15:74229200-74241000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr15:74229400-74233000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:74229400-74233000	Weak transcription	Stomach Mucosa	stomach
27	chr15:74229400-74233200	Weak transcription	NHEK	skin
28	chr15:74229600-74233000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr15:74229600-74233200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:74229600-74233200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr15:74229600-74233200	Weak transcription	HMEC	breast
32	chr15:74229600-74237000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:74229800-74233000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:74230000-74232800	Weak transcription	Ovary	ovary
35	chr15:74230000-74234000	Weak transcription	Lung	lung
36	chr15:74230000-74236400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:74230000-74236600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr15:74230000-74239200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:74230200-74236400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr15:74230400-74234200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:74230800-74233800	Genic enhancers	Stomach Smooth Muscle	stomach
42	chr15:74231000-74232800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr15:74231200-74232600	Enhancers	Osteobl	bone
44	chr15:74231200-74232800	Enhancers	NH-A	brain
45	chr15:74231400-74233000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr15:74231400-74233000	Enhancers	NHLF	lung
47	chr15:74231400-74233800	Enhancers	Fetal Lung	lung
48	chr15:74231400-74234600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:74231400-74234600	Genic enhancers	Fetal Stomach	stomach
50	chr15:74231400-74235000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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