Variant report

Variant	rs9783837
Chromosome Location	chr17:60034616-60034617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:60034410-60034661	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:60003458..60007739-chr17:60031552..60035376,4	MCF-7	breast:
2	chr17:60003720..60006070-chr17:60032703..60035089,4	MCF-7	breast:

Variant related genes	Relation type
MED13	TF binding region
ENSG00000108506	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16945750	0.92[AFR][1000 genomes]
rs28431006	0.80[AFR][1000 genomes]
rs58046635	0.82[AFR][1000 genomes]
rs6504078	0.90[AFR][1000 genomes]
rs7211128	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7212824	0.94[AFR][1000 genomes]
rs7221827	0.94[AFR][1000 genomes]
rs7224112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8069903	0.81[AMR][1000 genomes]
rs8080298	0.81[AMR][1000 genomes]
rs9783841	0.90[AMR][1000 genomes]
rs9909145	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv916786	chr17:59890834-60103687	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60017800-60050400	Strong transcription	Adipose Nuclei	Adipose
2	chr17:60018000-60046800	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr17:60018000-60072800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr17:60018000-60073400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:60018600-60047000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr17:60018600-60047200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr17:60018600-60072600	Strong transcription	Fetal Thymus	thymus
8	chr17:60018800-60073600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr17:60019000-60040000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr17:60019200-60051600	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr17:60019600-60050600	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr17:60020200-60050400	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr17:60020400-60050600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr17:60020400-60073200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr17:60020600-60043400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr17:60020600-60047200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr17:60020600-60073000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr17:60020800-60051800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr17:60020800-60073800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr17:60021000-60047600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr17:60021000-60050200	Strong transcription	Duodenum Mucosa	Duodenum
22	chr17:60021200-60043600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr17:60021200-60097000	Strong transcription	Dnd41	blood
24	chr17:60021800-60052400	Strong transcription	HepG2	liver
25	chr17:60021800-60073600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr17:60022000-60035800	Strong transcription	Brain Germinal Matrix	brain
27	chr17:60022000-60036600	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr17:60022000-60043000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr17:60022000-60051800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr17:60022200-60044200	Strong transcription	Fetal Muscle Trunk	muscle
31	chr17:60022200-60052200	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr17:60022200-60053200	Strong transcription	Fetal Intestine Large	intestine
33	chr17:60023000-60043200	Strong transcription	Fetal Muscle Leg	muscle
34	chr17:60023200-60040200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr17:60023200-60049400	Strong transcription	Skeletal Muscle Male	skeletal muscle
36	chr17:60023600-60050600	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr17:60025400-60036800	Strong transcription	Primary T cells from cord blood	blood
38	chr17:60025400-60074200	Strong transcription	Liver	Liver
39	chr17:60025400-60107600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr17:60026000-60039600	Strong transcription	Fetal Stomach	stomach
41	chr17:60026000-60040600	Strong transcription	Lung	lung
42	chr17:60028400-60035600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr17:60028400-60037200	Weak transcription	Esophagus	oesophagus
44	chr17:60028400-60059600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr17:60030200-60044200	Strong transcription	Thymus	Thymus
46	chr17:60031000-60041400	Weak transcription	Gastric	stomach
47	chr17:60031600-60038400	Weak transcription	Colonic Mucosa	Colon
48	chr17:60031600-60042400	Weak transcription	Fetal Brain Male	brain
49	chr17:60031800-60039600	Strong transcription	Fetal Intestine Small	intestine
50	chr17:60032600-60037200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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